DreEX6036114 @ danRer10
Exon Skipping
Gene
ENSDARG00000062650 | rif1
Description
replication timing regulatory factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3406]
Coordinates
chr9:22982133-22982724:+
Coord C1 exon
chr9:22982133-22982232
Coord A exon
chr9:22982338-22982605
Coord C2 exon
chr9:22982682-22982724
Length
268 bp
Sequences
Splice sites
3' ss Seq
GTCTCAAATTTCCTCTGAAGCTC
3' ss Score
6.19
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AGTCTGTCTATGCTAGATGCAATAGCACACATCTTGCTCATCATCGTTGAGAGTATGGACTTTTCTCCATATACCCCTCAGTTCCAGCAGAAGATGAAAT
Seq A exon
CTCCTCGTACACCCATGAGTTGGGTACGCAAGAGAAGCAGAGCCCTCGGGAATCTCTCAACCTTCCACACTCTTCTGATACAGACTCTAGAGGCTTTTCTCACTGCAGACCATTCAGAAGAATCTGCAGAGCCTTTAAATGGAATTGGCTCTGCCTTGGTGTCAATCTTGACCTCTCTTTTCACTAATATTACCCTTCCCTCATTCTTACAAGAGGTGCTCTCCAGCCTCACCAAACCACTTGCACGTCTTTATGAGCAGTTCTCCTG
Seq C2 exon
TTGTGATGACCCATCAAAGCTCAGTCCAGAACTAGGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062650-'25-36,'25-35,26-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]