GgaEX1049347 @ galGal4
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr7:34659226-34662559:+
Coord C1 exon
chr7:34659226-34659325
Coord A exon
chr7:34659995-34660259
Coord C2 exon
chr7:34662460-34662559
Length
265 bp
Sequences
Splice sites
3' ss Seq
ATATATCTTTTTAATGTTAGCTC
3' ss Score
4.13
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATGTCTGCAATGCTGGATGGTCTCACCCATGTTGTGGCAGTTATGGTGGACTGCATCAACTTTGCACCCTATGGTACTAAATATCAGCCCAAAAATAGAT
Seq A exon
CTCCACAGACACCTACTGACTGGTCTAAGAAGAAAAGGGAGCCCCTTGGGAAGCTCTCCTCCCTGTTCAAGCTTCTGGTGATGCTACTGGATTCCTTCCATGCTCTCAGTTCTGAAGAAACCTGCCCAGAACCATTGGCCTCTGTCGGTCATTCACTTATTGCTGTTCTTCACAACATCATCAGCCACGTTTCATTGCCTTCAATGATTGGGACTATGTTTGCAGTTTTTTCAAAACCACTGGCAGTATTTTATGAAAAAACAAA
Seq C2 exon
ACCTGTGTTAAGCCAAGCCAAACAGAAAATGCCCCTCTTGCTGCCTGGTTTTGAAAGCATTGAGATAGCTGACGAACAAAGCGGCCCATTCTCTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484_MULTIEX1-19/22=18-22
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.124 C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGCAATGCTGGATGGTC
R:
ATCAGAGAATGGGCCGCTTTG
Band lengths:
196-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]