MmuEX0039809 @ mm10
Exon Skipping
Gene
ENSMUSG00000036202 | Rif1
Description
replication timing regulatory factor 1 [Source:MGI Symbol;Acc:MGI:1098622]
Coordinates
chr2:52098853-52104588:+
Coord C1 exon
chr2:52098853-52098952
Coord A exon
chr2:52103433-52103697
Coord C2 exon
chr2:52104546-52104588
Length
265 bp
Sequences
Splice sites
3' ss Seq
TCAACCCAATTATGTCTTAGCAC
3' ss Score
4.07
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GATTTGCTATTCTTGGACAGGATCTCTCATATTATTATTGTAATGGTTGATTGTATCGACTTTTCACCATATAATAAGAAATACCAGCCAAAAATCAAAT
Seq A exon
CACCGCAGAGATCTTCAGATTGGTCCAGAAAGAAGAAGGAGCCTCTAGGGAAATTGGCTTCTTTATTTAAGCTAATTGTGAAAGTCATCGATACTTTCCACACTCTAAGCCTCAAGGAAACATTCTCTGATACACTGCTTGCTATTGGTAACTCTATCATTAGCATGCTTTCCAATGTATTTGGACATATTTCCTTGCCCTCTATGATCCGAGAAATATTTGCAACTTTTACAAGACCTCTGGCTTTACTGTATGAAAACTCAAA
Seq C2 exon
GCTGGATGAGGCTCCTAAAGTGTATACTAGTCTGAACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036202-'35-38,'35-36,37-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000069794fB3444
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTATTCTTGGACAGGATCTCT
R:
TCAGACTAGTATACACTTTAGGAGCC
Band lengths:
132-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types