GgaEX1049347 @ galGal3
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
NA
Coordinates
chr7:36785776-36787807:+
Coord C1 exon
chr7:36785776-36785875
Coord A exon
chr7:36786545-36786809
Coord C2 exon
chr7:36787765-36787807
Length
265 bp
Sequences
Splice sites
3' ss Seq
ATATATCTTTTTAATGTTAGCTC
3' ss Score
4.13
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATGTCTGCAATGCTGGATGGTCTCACCCATGTTGTGGCAGTTATGGTGGACTGCATCAACTTTGCACCCTATGGTACTAAATATCAGCCCAAAAATAGAT
Seq A exon
CTCCACAGACACCTACTGACTGGTCTAAGAAGAAAAGGGAGCCCCTTGGGAAGCTCTCCTCCCTGTTCAAGCTTCTGGTGATGCTACTGGATTCCTTCCATGCTCTCAGTTCTGAAGAAACCTGCCCAGAACCATTGGCCTCTGTCGGTCATTCACTTATTGCTGTTCTTCACAACATCATCAGCCACGTTTCATTGCCTTCAATGATTGGGACTATGTTTGCAGTTTTTTCAAAACCACTGGCAGTATTTTATGAAAAAACAAA
Seq C2 exon
GCTTGCTGACGTACCTAAAGCATACAGTAACCTTAACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484-'27-27,'27-26,28-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.124 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGCAATGCTGGATGGTC
R:
TGCTGTTAAGGTTACTGTATGCT
Band lengths:
140-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]