BtaEX0030458 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021020 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr2:44779531-44792159:-
Coord C1 exon
chr2:44792010-44792159
Coord A exon
chr2:44780753-44781017
Coord C2 exon
chr2:44779531-44779573
Length
265 bp
Sequences
Splice sites
3' ss Seq
CTGTCACTGTTTTATCTTAGCAC
3' ss Score
6.49
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTCACCATGAAGACCTTACTTAAAACTTGGTCAGAATTATATAGAGCATTTGCTCGCTGTGCAGCTTTGGTGGCAACTGCGGAAGAGAATTTATGCTGTGAGGAATTTTGTTCCAAGATAATGTCCAGTTTGGAAGATGAAGGCCTTTCA
Seq A exon
CACCACAGAGACCTACAGATTGGTCCAAAAAGAAGAAGGAACCTTTAGGGAAGTTGGCTTCTTTAATTAAACTTATTGTGAGAGTGATCTATTCTTTTCACACACTGAGCCTCAAGGAAGTACATTCTGATACTCTCCTCACTATTGGCAACTCAATCACCAGCATTCTTTCCAATTTACTTGGACATATTTCTCTGCCTTCTATGATCCAGAAAATATTTGCAGCTTTAACAAGACCTCTGGCATTATTTTATGAAAACTCAAA
Seq C2 exon
GCTTGATGAAGTTCCTAAAGTGTATAGTTGTATGAACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021020_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.079 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000027997fB5919
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCATGAAGACCTTACTTAAAACT
R:
ACACTTTAGGAACTTCATCAAGC
Band lengths:
172-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development