MmuALTD0006011-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000075425 | Gm13547
Description
predicted gene 13547 [Source:MGI Symbol;Acc:MGI:3650473]
Coordinates
chr2:29617121-29618959:+
Coord C1 exon
chr2:29617121-29617221
Coord A exon
NA
Coord C2 exon
chr2:29618915-29618959
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGG
5' ss Score
6.23
3' ss Seq
CCTGCTCTGTTCTGTGACAGGTG
3' ss Score
11.34
Exon sequences
Seq C1 exon
TGATTCTCATTCCCCGAGAGACATCTGCCAGACGAAGGAAACAGGCCTCAGCCCTGCTGAAGGAGGAGACCCGAGTGAGGGCCACATCCTGCTGGAGTTGG
Seq A exon
NA
Seq C2 exon
GTGCCCACGGATGGCACTGCTCCTGCACCGCCAACCACTGATGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075425-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=NA C2=0.593
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTCTCATTCCCCGAGAGACA
R:
GTCATCAGTGGTTGGCGGTG
Band lengths:
146-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: