MmuALTD0006011-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000075425 | Gm13547
Description
predicted gene 13547 [Source:MGI Symbol;Acc:MGI:3650473]
Coordinates
chr2:29761561-29763439:+
Coord C1 exon
chr2:29761561-29761701
Coord A exon
NA
Coord C2 exon
chr2:29763395-29763439
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGG
5' ss Score
6.23
3' ss Seq
CCTGCTCTGTTCTGTGACAGGTG
3' ss Score
11.34
Exon sequences
Seq C1 exon
GAGATGGCTTCCTCTGGCCATGATGTTAGTACTTCTTTCGTGATTCTCATTCCCCGAGAGACATCTGCCAGACGAAGGAAACAGGCCTCAGCCCTGCTGAAGGAGGAGACCCGAGTGAGGGCCACATCCTGCTGGAGTTGG
Seq A exon
NA
Seq C2 exon
GTGCCCACGGATGGCACTGCTCCTGCACCGCCAACCACTGATGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075425-1-2,2-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.276 A=NA C2=0.583
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGGCTTCCTCTGGC
R:
GTCATCAGTGGTTGGCGGTG
Band lengths:
186-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types