MmuEX1026836 @ mm10
Exon Skipping
Gene
ENSMUSG00000039826 | Trub2
Description
TruB pseudouridine (psi) synthase family member 2 [Source:MGI Symbol;Acc:MGI:2442186]
Coordinates
chr2:29759801-29779895:-
Coord C1 exon
chr2:29779823-29779895
Coord A exon
chr2:29776638-29777956
Coord C2 exon
chr2:29759801-29761691
Length
1319 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTCTGTGACCCACAGAGG
3' ss Score
8.23
5' ss Seq
CAGGCTGAT
5' ss Score
-3.93
Exon sequences
Seq C1 exon
ACCACGTGACCAGAGAGCGGCTGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGAT
Seq A exon
AGGTGCAGTGTATGCACGAGACGCAGCAGCAGCTGAGGAAGCTGGTGCATGAAATCGGCCTGGAGCTGAAGACCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCGGGATGGCTTCTTCGGCCTGGATGATGCCCTCCTGAGAACCCAGTGGGACCTACACAACATCCAGGATGCTATCCAGGCGGCAGCTCCCCGGGTGGCAGCGGAACTGCAAAAGAACTTGAGCCTAAAGCTGGGCCACCATCAGCTCCCCAGCACTGGGCAACCTTGGGGTCTCAAGGACCCAAGCTCCACTTTGGAGTTGGAAAGCTGTTCAGGGCAGTAAAGGGCCAGGTAGCAACCAGATGGAGAGCAAACAGGCTCTTCACAGGTCAGAACTGGTCACTCCGCAGGAGTAATGAGATCAGGGGCCCCTGAGCCATTATCCTTGAGACACAGACTAACTGCAGAGGCAAGCAGGTGTGGCCATGGGGGCCTATCGTCCCAGCTAATTGGGAGGCCCAGGTTAGAATCTTAACAGTTCAAGGCCAGCCTAGGGTTTCTTAGTAAAACCTTGACTCAGAGTCAGGCATGATGTCTCAGGCCTGTAATCTTAGCCCTCCAGAGGTAGAAAGGAAAATCGTGAGTTCAAGGCCAGCCTGGGCTACTTGCAGTGTTCAGCTTTTCAACTGATGGGAAATGCCGCTGCCTCAGCACTCCTTGGCCGTGAGCGATGATCTTTTCACAGAGGGAAAGTCTTTTTTGCTGTTTCAAGGTGTCTCACAGCTGAGATCTCAGTACTACTCAGCTGAGCCAGGAGGATGGCTCTGAGTTTAAGGCCAGTCTGAACAAGTCTCCTGGAGTACTTTGTGGTATGTGTCAGTATTTAATCCTGCCAGTCAATCCTGCAAACCTGTAATTAGCACCTGGGTGGTGGAGACTGGAAGATCTGGAGTTCAAGGTCATCTTTGGCTACATAAGTTCCAGGCTACATGAAACGTTATCTCTAAGACAATATAAAAAGCCCAGAATTATTTTTTAAAAGGTTTTCTTTCTTATGCATGTGAGTATTTACATGCATGTATGTCCACACCTGGTGCATCATGGAGGCTAGGAAAGGATGTAAGAGCCCTGTGGCTGGGCTTAAAGGCAGTTGTGAGCCACCAAGAAGATGCTGACAATGGACCACTAGTCCTCTGGAAGACAGCTTAACCACTGGTCCATTTCTTCAGAATTTAATTTAATTGCCTGCCCTGTGATACAATGCTGTAACTATCCCGTGCCCCGGCTGTAAACACAGGCTGATGATTGTTGGTGTCTGCAGTGTGAACACTAACAG
Seq C2 exon
CAGGATGTGGCCCTCACTCGGGTCTCCTCCTTCAGCAGGGCTGAGGCCTGTTTCCTTCGTCTGGCAGATGTCTCTCGGGGAATGAGAATCACGAAAGAAGTACTAACATCATGGCCAGAGGAAGCCATCTCTGTCCTAGCGGGAGTCACTGTCTGAAGTCTGTGAGCTCAGTCGTGAGCTCACAATGCTGCCGTGAGCTCACAGCTCCGTGCTCCCCAGCTTCCCAGGATTGAACAAGACCTGCCTATCACGTTAAAGGAAGCCACAAACACCCATTCTGGCATCTTCAAGTCCACTGGAAACCAACTTACCCACTGCAGCATGTGGGATGCCGCCACATTAGGCAACCTGGAGGGAGCACGGCCTTCCTCTGTGGGCATTTTTTAAAAAAACATGGGCATATGCCTTCTTGGAGAGCTTCTCTGTGCTCAGGAAATACTTCCCAGAAGATTTCACCTTAGTGTACTGATGCTGGTCTCTTCTTCTTCTTTTAAATTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039826_MULTIEX1-2/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=NA
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=PD(5.3=32.0),PF0150913=TruB_N=FE(16.0=100)
A:
PF0150913=TruB_N=PD(8.7=50.0)
C2:
NA
Main Inclusion Isoform:
ENSMUST00000113807fB18753
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCTCCCACCAAAAAGCTC
R:
GCTGCAGTGGGTAAGTTGGTT
Band lengths:
349-1668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types