MmuALTA0018985-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000039826 | Trub2
Description
TruB pseudouridine (psi) synthase family member 2 [Source:MGI Symbol;Acc:MGI:2442186]
Coordinates
chr2:29761588-29779895:-
Coord C1 exon
chr2:29779823-29779895
Coord A exon
chr2:29761689-29761691
Coord C2 exon
chr2:29761588-29761688
Length
3 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
CTCCCCATACCCAACTCCAGCAG
3' ss Score
2.98
Exon sequences
Seq C1 exon
ACCACGTGACCAGAGAGCGGCTGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGAT
Seq A exon
CAG
Seq C2 exon
GATGTGGCCCTCACTCGGGTCTCCTCCTTCAGCAGGGCTGAGGCCTGTTTCCTTCGTCTGGCAGATGTCTCTCGGGGAATGAGAATCACGAAAGAAGTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039826-14-23,14-22-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=PD(5.3=32.0),PF0150913=TruB_N=FE(16.0=100)
A:
NA
C2:
PF0150913=TruB_N=PD(2.1=7.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCTCCCACCAAAAAGCTC
R:
AGACATCTGCCAGACGAAGGA
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types