MmuEX0049246 @ mm10
Exon Skipping
Gene
ENSMUSG00000039826 | Trub2
Description
TruB pseudouridine (psi) synthase family member 2 [Source:MGI Symbol;Acc:MGI:2442186]
Coordinates
chr2:29776110-29779895:-
Coord C1 exon
chr2:29779823-29779895
Coord A exon
chr2:29778732-29778868
Coord C2 exon
chr2:29776110-29777956
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTGGCCCTCCCAAATCCCAGGTA
3' ss Score
6.48
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ACCACGTGACCAGAGAGCGGCTGGACCGGATCCTGGCTGTGATCCAAGGCTCCCACCAAAAAGCTCTGGTGAT
Seq A exon
GTACTCCAACCTGGACCTGAAATCCCAGGAGGCCTATGAGATGGCTGTGCAAGGTGTGATCAGGCCCATGAACAAGTCCCCCATGCTCATCTCTGGCATCCGCTGCCTGCACTTTGCACCTCCCGAGTTTCTTTTGG
Seq C2 exon
AGGTGCAGTGTATGCACGAGACGCAGCAGCAGCTGAGGAAGCTGGTGCATGAAATCGGCCTGGAGCTGAAGACCAGCGCTGTCTGCACGCAAGTGCGGCGGACTCGGGATGGCTTCTTCGGCCTGGATGATGCCCTCCTGAGAACCCAGTGGGACCTACACAACATCCAGGATGCTATCCAGGCGGCAGCTCCCCGGGTGGCAGCGGAACTGCAAAAGAACTTGAGCCTAAAGCTGGGCCACCATCAGCTCCCCAGCACTGGGCAACCTTGGGGTCTCAAGGACCCAAGCTCCACTTTGGAGTTGGAAAGCTGTTCAGGGCAGTAAAGGGCCAGGTAGCAACCAGATGGAGAGCAAACAGGCTCTTCACAGGTCAGAACTGGTCACTCCGCAGGAGTAATGAGATCAGGGGCCCCTGAGCCATTATCCTTGAGACACAGACTAACTGCAGAGGCAAGCAGGTGTGGCCATGGGGGCCTATCGTCCCAGCTAATTGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039826_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.101
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=PD(5.3=32.0),PF0150913=TruB_N=FE(16.0=100)
A:
PF0150913=TruB_N=FE(30.7=100)
C2:
PF0150913=TruB_N=PD(6.0=8.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCTCCCACCAAAAAGCTC
R:
CAAGTTCTTTTGCAGTTCCGCT
Band lengths:
252-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types