HsaEX6063219 @ hg38
Exon Skipping
Gene
ENSG00000167112 | TRUB2
Description
TruB pseudouridine synthase family member 2 [Source:HGNC Symbol;Acc:HGNC:17170]
Coordinates
chr9:128305161-128311601:-
Coord C1 exon
chr9:128311529-128311601
Coord A exon
chr9:128310887-128311023
Coord C2 exon
chr9:128305161-128309875
Length
137 bp
Sequences
Splice sites
3' ss Seq
GCCCCCTTCCTGATCTGCAGGTA
3' ss Score
9.97
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
ACCACGTGACCAGAGAGAAGCTGGACCGCATTCTGGCCGTTATCCAAGGCTCCCATCAGAAGGCCCTGGTGAT
Seq A exon
GTACTCCAACCTCGACCTGAAGACCCAGGAGGCCTATGAGATGGCCGTGAGAGGCCTGATCCGGCCCATGAACAAGTCCCCGATGCTGATAACTGGCATCCGATGCCTCTACTTTGCACCTCCGGAATTCCTCTTAG
Seq C2 exon
AGGTGCAGTGCATGCATGAGACGCAGAAAGAGCTGCGGAAGTTGGTTCATGAAATCGGCCTGGAACTAAAGACCACTGCTGTCTGCACCCAAGTGCGGCGCACGCGCGACGGCTTCTTCACGCTAGACAGTGCCCTCCTGAGGACCCAGTGGGACCTAACCAACATCCAGGATGCTATCCGGGCTGCTACCCCTCAGGTAGCTGCAGAGCTGGAGAAGAGCTTGAGCCCGGGGCTGGACACCAAGCAGCTCCCCAGTCCGGGATGGTCCTGGGACTCCCAGGGCCCGAGCTCTACCTTGGGGCTGGAGAGGGGTGCGGGGCAGTGAATGCCCAGGCAGCTCCTGGGGCAGTGGATGGATAAATAGAAGAACTGCTATGAGCTGGACCTGATAGCTGTGCAGAAAGTGAGAGCAGGGGCACCTTTTCTACGTAAGACACAAAACTCAAGCTGTAACAGAAAGGTCAATGGACTTGACCCAACTGAGAAGGAAAAACTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167112-'10-11,'10-10,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.222
Domain overlap (PFAM):
C1:
PF0150913=TruB_N=FE(16.0=100)
A:
PF0150913=TruB_N=FE(30.7=100)
C2:
PF0150913=TruB_N=PD(6.0=8.3)
Main Skipping Isoform:
ENST00000372890fB28905
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGGCTCCCATCAGAAGG
R:
CAAGCTCTTCTCCAGCTCTGC
Band lengths:
255-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains