BtaEX6046392 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004663 | TRUB2
Description
Bos taurus TruB pseudouridine (psi) synthase homolog 2 (E. coli) (TRUB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001110073]
Coordinates
chr11:98919236-98921652:-
Coord C1 exon
chr11:98921580-98921652
Coord A exon
chr11:98920587-98920723
Coord C2 exon
chr11:98919236-98919785
Length
137 bp
Sequences
Splice sites
3' ss Seq
TGGCCCCTCCTGATCCCCAGGTA
3' ss Score
8.35
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
ACCACGTGACCAGAGAGAAGTTGGACCGTATCCTGGCTGTGATCCAAGGTTCCCATCAGAAGGCTCTGGTGAC
Seq A exon
GTACTCCAACCTTGACCTACAGACCCAGGAGGCCTATGAGATGGCCGTTAGCGGCGTGATCCGGCCCATGAACAAGTCCCCGATGCTGATCACCGGCATCCGATGCCTCCAGTTTGCGCCTCCGGAATTTCTCTTAG
Seq C2 exon
AGGTGCAGTGCATGCATGAGACACAGAAGCAGCTGCGAAGGCTGGTGCACGAAATCGGCCTGGAGCTGAAGAGCACCGCTGTCTGTGCCCAGGTGCGGCGGACACGGGACGGCTTTTTCACCCTGGATGATGCCCTCCTGAGGACCCAGTGGGACCTACCGAACATCCAGGATGCCATCCAGGCTGCAGCACCCCGGGTGGCAGCAGAGCTGGAGAAGAGCTTGAGGCCTTGGCTGGGCACCCAGGAGCCCCCTGGTCCAGGCCAGCCCTGGGACTCCAAGAGGCCATGCTCTGCCTTGGGACCAGAGAGCCACGTGGGGCATTGACAGGCCAGCAGCTGGCGGAACAGTGGATGTCTAAAAATAAGAGCTGGTGGAACAGTGGGTGTCTAAAAATAAGAATTGTTCATGGCTGGAACTGCTAACTGCAGAACATGAGAGCAGGAGGGGCTTTTTTGCACATGACAGAAAGCCTGAAGCTGTAAGAGAAACCATTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004663-'15-15,'15-13,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.315
Domain overlap (PFAM):
C1:
PF0150913=TruB_N=FE(15.9=100)
A:
PF0150913=TruB_N=FE(30.5=100)
C2:
PF0150913=TruB_N=PD(6.0=8.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGTTCCCATCAGAAGGC
R:
CAAGCTCTTCTCCAGCTCTGC
Band lengths:
254-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]