DreEX0081628 @ danRer10
Exon Skipping
Gene
ENSDARG00000028379 | trub2
Description
TruB pseudouridine (psi) synthase family member 2 [Source:ZFIN;Acc:ZDB-GENE-040704-41]
Coordinates
chr6:41026044-41026923:-
Coord C1 exon
chr6:41026851-41026923
Coord A exon
chr6:41026627-41026763
Coord C2 exon
chr6:41026044-41026527
Length
137 bp
Sequences
Splice sites
3' ss Seq
CATATTATATCTATATTCAGATA
3' ss Score
6.75
5' ss Seq
TGGGTTAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
ACCATATTACCCATGATAAGCTGGAAAGAGTTCTTGCCATGTTACAGGGATCCAATCAGAAAGCCTTGATCAC
Seq A exon
ATATTCTCAAGTGGAACTGCAAACTCAGGAGGCTTATGAGCTTGCAGCGAGAGGTTTATTGTATCCTGATGGTAAAAGCCCACCTATTTTGACTGGCCTGCGATGCATAAAATTTAATCCACCTCATTTTACTTTGG
Seq C2 exon
AGGTCCGGTGTGTAAATGAGACTCAGAAGTATCTGCGTAAATTGATTCATGAGGTTGGACTGGAGTTGCGGGCCTCTGCGGTCTGTACTAAAGTGCGAAGAACACGAGATGGACCCTTCAAGGTAGAGAACGCACTCACTCGACAACACTGGACTGCAGACAGTGTCTTACAAGCTATTAATCACTTTCGCAAGACTGCCCGCAAAATCAGGAAATCTGGGATGTACATGCAGAGCAATGTCCGGATGACCTTAGACGCAGATACCAGAGAGCAAACTCAGTCTGAACATATGAGTGGAGTGCGGGATGTACTTTCTGACATGATTCTGGAGAGAGAGACACCTGGAGAACCGAATGAGGGGAGAACAAAAAATTAAATCAACTGGGAATGATTTGAGTTCTGAGACATATTTACTTGTTCACTATAATTTATGTATTTGTTATGTTTTCATTATTGTGTGTCATTAAATGTGTATTTTAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028379_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=FE(13.0=100),PF0150913=TruB_N=FE(16.0=100)
A:
PF0084917=PseudoU_synth_2=PD(8.2=31.9),PF0150913=TruB_N=FE(30.7=100)
C2:
PF0150913=TruB_N=PD(6.0=7.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATGTTACAGGGATCCAA
R:
TTTCCTGATTTTGCGGGCAGT
Band lengths:
254-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]