RnoEX0094248 @ rn6
Exon Skipping
Gene
ENSRNOG00000043189 | Trub2
Description
TruB pseudouridine synthase family member 2 [Source:RGD Symbol;Acc:1359394]
Coordinates
chr3:8338484-8340934:-
Coord C1 exon
chr3:8340862-8340934
Coord A exon
chr3:8339756-8339892
Coord C2 exon
chr3:8338484-8339069
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTGGCCCTCCTGAATCCCAGGTA
3' ss Score
6.38
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ACCATGTGACTAGAGAGCGGCTGGACCGGATCCTGGCTATGATCCAAGGCTCCCACCAAAAAGCCCTGGTAAT
Seq A exon
GTACTCCAACCTGGACCTGAAGTCCCAGGAGGCCTACGAGAGGGCTGTGCAAGGCGTGATCCGGCCCATGAACAAGTCCCCAATGCTCATCGCTGGCATCCGCTGCCTGCACTTTGCACCTCCTGAGTTTCTTTTGG
Seq C2 exon
AGGTGCAGTGTATGCACGAGACACAGCAGCAGCTGAGGAGGCTGGTGCATGAAATCGGCCTGGAGCTGAAGACCACCGCTGTCTGCATGCAAGTGCGGCGCACTCGGGATGGCTTCTTCGGGCTGGACGATGCCCTCCTGAGAACCCAGTGGGACCTGCACAGCATTCAGGATGCTATTCAGACGGCAGCCCCCCGGGTAGCCAGAGAACTGAGAAAGAACTTGAGCCTAATGTCGGGCCACCAACAACAGCTCCCCAGTGCCGGGCAGCCTTGGGCTTCAAGGGTCCAAGCTCCACTTTGAAAGTGGGAGCCATGCAGGGTAGTAAGGCCAGGCAGGCGCCTGGATGTAGGGGCAAACAGGCTTTCAATAGTCAGAACTGGTCACTCTGCAGAGAGTGAGATCAAGGAGGGCCCTGAGCTGTCATCTCAGCAAAACAAAAGTACAGGAGGGAGCCTTCTTCCTGTCACACACAAACTAACCACAGAGGTGAGTGGGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043189-'8-16,'8-15,11-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.113 C2=0.040
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=FE(12.9=100),PF0150913=TruB_N=FE(16.0=100)
A:
PF0084917=PseudoU_synth_2=PD(9.7=38.3),PF0150913=TruB_N=FE(30.7=100)
C2:
PF0150913=TruB_N=PD(6.0=8.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGGCTCCCACCAAAAAG
R:
TCTCAGTTCTCTGGCTACCCG
Band lengths:
246-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]