GgaEX0006737 @ galGal4
Exon Skipping
Gene
ENSGALG00000004920 | TRUB2
Description
TruB pseudouridine (psi) synthase family member 2 [Source:HGNC Symbol;Acc:HGNC:17170]
Coordinates
chr17:4989064-4991504:+
Coord C1 exon
chr17:4989064-4989136
Coord A exon
chr17:4989520-4989656
Coord C2 exon
chr17:4990340-4991504
Length
137 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTCTCCTTTTTCCAGGCA
3' ss Score
11.55
5' ss Seq
TAGGTAGGG
5' ss Score
6.53
Exon sequences
Seq C1 exon
ACCATATCACGAGGGAGAAGCTGGAACGGATCCTCGCCGTCATCCAAGGGACGAATCACAAAGCCCTGCTGAT
Seq A exon
GCATTCTCACATCGATATGAAAACACAGGAGGCCTACGAGCTGGCTGTGAAGGGGTTGATTCGTCCCATGGGAAAAAGCCCCCCAATCATCACTGCAATCCGGTGTCTGCAGTTTGCACTCCCTGAATTCCAGCTAG
Seq C2 exon
AAATCCACTGCTTGCATGAGACCCAGCAGTACCTCCGGAAGGTAGTCCACGAGATTGGTCTGGAGCTGAAATCATCTGCTGTGTGCACACAGGTGCGAAGAACACGTGATGGTGTCTTCACGTTGGATGATGCTCTCCTGAGAACGCAGTGGAACCTGCAGAGCATACGGAGTGCAATTTTGGACTGTCAGCTCAGAGTGAAAACTGAGTTAGAGAAAACAATGGGCCATTGGGATGGAAGTGTTCTTCAGGAGATGGATGCTGAGACGGCCCACACCGCTGACAGCTGAGCGTGTGCTCCAGAGGGAACATCCACAGCCCATCTCTGCAGCACAATAACATCGCTACGTGCTGACAGAATGATGGACAACAGAAGGAAAGAGGTTAATTGCAGTTCACTTCCACCACTTCTTCGAGATGACTTTAATCAGAGAGGCATTTTTTCATTGACAGGCTGTATAATTCTTTGTTTTAAAGCATTGTAAACAGTTCGTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004920_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
PF0150913=TruB_N=FE(16.0=100)
A:
PF0150913=TruB_N=FE(30.7=100)
C2:
PF0150913=TruB_N=PD(6.0=9.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACGAGGGAGAAGCTGGAA
R:
ATTGCACTCCGTATGCTCTGC
Band lengths:
246-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]