MmuEX6101827 @ mm9
Exon Skipping
Gene
ENSMUSG00000053896 | 4933409G03Rik
Description
RIKEN cDNA 4933409G03 gene [Source:MGI Symbol;Acc:MGI:3045336]
Coordinates
chr2:68426848-68429587:+
Coord C1 exon
chr2:68426848-68426874
Coord A exon
chr2:68426969-68427044
Coord C2 exon
chr2:68429517-68429587
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTATTTCAAAACTCATCCAGCCT
3' ss Score
2.19
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AACACCAAGACAGATGCTTGCTCAATG
Seq A exon
CCTACTACCACCGAAGTGGAAGATTTTCATCAAGATGTAGCAGCAGAAGAGGCAGAAGCAAACCCATCCCAGTCAG
Seq C2 exon
AACCAGGCTTAGGAGTGTCCCCAGAGGAGAAAGCAAAGACATCTGACCACAATGAAAATAACTGGTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053896-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCAAGACAGATGCTTGCT
R:
CAGTGACCAGTTATTTTCATTGTGGT
Band lengths:
97-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: