HsaEX0004400 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27342249-27349469:-
Coord C1 exon
chr10:27349441-27349469
Coord A exon
chr10:27349274-27349346
Coord C2 exon
chr10:27342249-27342319
Length
73 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCAAAACCCATTCAGCCT
3' ss Score
2.82
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AGTCTCCTGAGAGATATCTTCACTTGAAG
Seq A exon
CCTACCATTGAAATGAAAGATTCTGTTCCAAATAAAGCAGGAGGAATGAAGGATGTACAAACATCCAAAGCAG
Seq C2 exon
CTGAACATGACTTAGAAGTAGCATCAGAAGAAGAGCAAGAAAGGGAAGGGAGTGAAAATAACCAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-'21-21,'21-20,22-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTGAGAGATATCTTCACTTGA
R:
TGTGGCTGGTTATTTTCACTCCC
Band lengths:
97-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)