MmuEX6006485 @ mm10
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118535079-118539875:-
Coord C1 exon
chr6:118539847-118539875
Coord A exon
chr6:118539686-118539764
Coord C2 exon
chr6:118535079-118535143
Length
79 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTCAAATCCATCCAGCCT
3' ss Score
4.93
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AGGCCCCCAGGAAATATGCAATCATGGAG
Seq A exon
CCTACCATCGAAAGGAGGGCTCCTGTTCTGAACAAAACGGAGACAGTGGGAATGACGGATGCACAGACTTTCAAGTCAG
Seq C2 exon
AGCCAGAATCAGTATCAAGAGAAGAACAGACAAGGCTCAGTGGCAGCGAGGACAGCCAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'18-22,'18-20,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=0.870 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCCCAGGAAATATGCAAT
R:
CTTCTGCTGGCTGTCCTCG
Band lengths:
93-172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types