RnoEX0009598 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150585389-150589716:-
Coord C1 exon
chr4:150589688-150589716
Coord A exon
chr4:150589526-150589604
Coord C2 exon
chr4:150585389-150585438
Length
79 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTCAAACCCGTCCAGCCT
3' ss Score
4.23
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AGGCCCCCAGGAGGTGTCCAATCATGAAG
Seq A exon
CCTGCCGTGGAAAGGAGGGCTCCTGTTCTGAACAAATCAGAGACAGTGGGGATGAAGGATGTGCAGACTTTCAAACCAG
Seq C2 exon
AGCCAGAAGAGCAGACAAGGCTCAGAGGCAGTGAAGACAGCCAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'21-21,'21-18,22-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGGAGGTGTCCAATCAT
R:
TTTGCTGGCTGTCTTCACTGC
Band lengths:
73-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]