MmuEX6100977 @ mm9
Exon Skipping
Gene
ENSMUSG00000046618 | Olfml2a
Description
olfactomedin-like 2A [Source:MGI Symbol;Acc:MGI:2444741]
Coordinates
chr2:38802736-38806934:+
Coord C1 exon
chr2:38802736-38802843
Coord A exon
chr2:38804440-38804649
Coord C2 exon
chr2:38806661-38806934
Length
210 bp
Sequences
Splice sites
3' ss Seq
CCATGAATCCTTCCCCACAGAGC
3' ss Score
9.15
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTGCAGTCTATGGTGGATCTCCTGGAGGGTGCCCTGTACAGCATGGATCTGATGAAAGTGCATGCCTACATCCAGAAGGTGGCCTCCCAGATGAATACGCTGGAGGAG
Seq A exon
AGCATCAAGGCCAACCTGAGCCTGGAGAACAAGGTGGTGAAAGACAGCGTACACCACCTCAGTGAGCAACTGAAGAGCTATGAGAACCAGTCAGCCATCATGATGAGCATCAAGAAGGAGCTGTCTAGCCTGGGCCTCCAGTTGCTGCAGAGGGATGCAGCCGCTGTCCCTGCCACTGCCCCAGCCTCAAGCCCCGACAGCAAGGCTCAG
Seq C2 exon
GACACAGCTGGAGGGCAAGGCAGAGATCTCAACAAATATGGCAGCATACAGAAGAGCTTCTCAGACAAGGGCCTGGCAAAGCCTCCCAAGGAGAAGCTGCTGAAAGTGGAGAAGCTGAGGAAGGAGAGCATCAAGGGCAGAATACCCCAGCCCACAGCCAGGCCACGTGCGCTGGCTCAGCAGCAGGCAGTGATCCGAGGCTTCACCTACTACAAGGCAGGCAGACAGGAGGCCAGACAGGAGGCCAGACAGGAGGCACCCAAGGCTGCCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046618-'2-3,'2-2,4-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.229 C2=0.859
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=FE(33.0=100),PF026169=ScpA_ScpB=FE(31.0=100),PF070286=DUF1319=FE(27.1=100)
A:
PF123083=Noelin-1=PD(17.0=25.7),PF026169=ScpA_ScpB=PD(48.7=78.6),PF070286=DUF1319=PD(33.3=61.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCTGTACAGCATGGATC
R:
TGCCTGCCTTGTAGTAGGTGA
Band lengths:
303-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: