RnoEX6016673 @ rn6
Exon Skipping
Gene
ENSRNOG00000014034 | Olfml2a
Description
olfactomedin-like 2A [Source:RGD Symbol;Acc:1311651]
Coordinates
chr3:23237628-23242144:+
Coord C1 exon
chr3:23237628-23237735
Coord A exon
chr3:23239569-23239778
Coord C2 exon
chr3:23241880-23242144
Length
210 bp
Sequences
Splice sites
3' ss Seq
ATCTCTGCTTGATCCCACAGAGC
3' ss Score
10.3
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTGCAGTCTATGGTGGATCTCCTGGAGGGTGCCCTGTACAGCATGGATCTGATGAAAGTACATGCCTACATCCAGAAGGTGGCCTCGCAGATGAATACGCTGGAGGAG
Seq A exon
AGCATCAAGACCAACCTGAGCCTGGAGAACGAGGTGGTGAAAGACAGCGTACGTCACCTCAGCGAGCAACTGAAGAGCTATGAAAACCAGTCAGCCATCATGATGAGCATCAAGAAGGAGCTGTCTAACCTGGGCCTCCAGTTGCTGCAGAGGGATGCGGCTGCCATCCCTGCCAGTGCCCCAGCCTCAAGCTCCGACAACAAGGCTCAG
Seq C2 exon
GACACAGCTGGAGGGCAAGGTAAAGAGCTCAATAAATATGGCGGCATACAGAAGAGTTTCTCAGACAAGAGCCTCGCAAAGCCTCCCAAGGAGAAGCTGCTGAAGGTGGAGAAGCTGAAGAAGGAGACCATCAAGGGCAGAATACCCCCCCACCCCACCGCCAGGCCACGAGCTTTAGCTCAGCAGCAAGCCGTGATCCGAGGCTTCACCTACTACAAGGCGGGCAGACAGGAGGCCAGACAGGAAGCGCCCAAGGCTGCCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014034-'3-5,'3-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.702
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=FE(32.1=100),PF070286=DUF1319=FE(26.7=100)
A:
PF123083=Noelin-1=PD(19.3=30.0),PF070286=DUF1319=PD(32.8=61.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCTGTACAGCATGGATC
R:
CGCCTTGTAGTAGGTGAAGCC
Band lengths:
302-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]