MmuEX6100977 @ mm10
Exon Skipping
Gene
ENSMUSG00000046618 | Olfml2a
Description
olfactomedin-like 2A [Source:MGI Symbol;Acc:MGI:2444741]
Coordinates
chr2:38947216-38951414:+
Coord C1 exon
chr2:38947216-38947323
Coord A exon
chr2:38948920-38949129
Coord C2 exon
chr2:38951141-38951414
Length
210 bp
Sequences
Splice sites
3' ss Seq
CCATGAATCCTTCCCCACAGAGC
3' ss Score
9.15
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTGCAGTCTATGGTGGATCTCCTGGAGGGTGCCCTGTACAGCATGGATCTGATGAAAGTGCATGCCTACATCCAGAAGGTGGCCTCCCAGATGAATACGCTGGAGGAG
Seq A exon
AGCATCAAGGCCAACCTGAGCCTGGAGAACAAGGTGGTGAAAGACAGCGTACACCACCTCAGTGAGCAACTGAAGAGCTATGAGAACCAGTCAGCCATCATGATGAGCATCAAGAAGGAGCTGTCTAGCCTGGGCCTCCAGTTGCTGCAGAGGGATGCAGCCGCTGTCCCTGCCACTGCCCCAGCCTCAAGCCCCGACAGCAAGGCTCAG
Seq C2 exon
GACACAGCTGGAGGGCAAGGCAGAGATCTCAACAAATATGGCAGCATACAGAAGAGCTTCTCAGACAAGGGCCTGGCAAAGCCTCCCAAGGAGAAGCTGCTGAAAGTGGAGAAGCTGAGGAAGGAGAGCATCAAGGGCAGAATACCCCAGCCCACAGCCAGGCCACGTGCGCTGGCTCAGCAGCAGGCAGTGATCCGAGGCTTCACCTACTACAAGGCAGGCAGACAGGAGGCCAGACAGGAGGCCAGACAGGAGGCACCCAAGGCTGCCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046618-'4-3,'4-2,6-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.229 C2=0.859
Domain overlap (PFAM):
C1:
PF070286=DUF1319=FE(27.1=100)
A:
PF070286=DUF1319=PD(33.3=61.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCTGTACAGCATGGATC
R:
TGCCTGCCTTGTAGTAGGTGA
Band lengths:
303-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types