HsaEX0044720 @ hg19
Exon Skipping
Gene
ENSG00000185585 | OLFML2A
Description
olfactomedin-like 2A [Source:HGNC Symbol;Acc:27270]
Coordinates
chr9:127557303-127563942:+
Coord C1 exon
chr9:127557303-127557410
Coord A exon
chr9:127561564-127561770
Coord C2 exon
chr9:127563693-127563942
Length
207 bp
Sequences
Splice sites
3' ss Seq
CAATCCTGCCCCCTCCGCAGAGC
3' ss Score
8.8
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTGCAGTCCATGGTGGATCTCCTGGAGGGCACCCTGTACAGCATGGACTTGATGAAGGTGCACGCCTACGTCCACAAGGTGGCCTCCCAGATGAACACACTGGAAGAG
Seq A exon
AGCATCAAGGCCAACCTGAGCCGGGAGAATGAGGTGGTGAAGGACAGCGTGCGCCACCTCAGTGAGCAGTTGAGGCACTATGAGAATCACTCTGCCATCATGCTGGGCATCAAGAAGGAGCTGTCCCGCCTGGGCCTCCAGCTGCTGCAGAAGGATGCCGCCGCCGCCCCTGCCACCCCTGCCACGGGCACTGGTAGCAAGGCCCAG
Seq C2 exon
GACACAGCTAGAGGAAAAGGCAAGGACATCAGCAAGTATGGCAGTGTGCAGAAAAGCTTTGCAGACAGAGGCCTCCCAAAACCTCCCAAGGAGAAGCTGCTTCAGGTGGAGAAGCTGAGAAAGGAGAGCGGCAAGGGCAGTTTCCTCCAGCCCACAGCCAAGCCCCGCGCCCTGGCCCAGCAGCAGGCTGTGATCCGGGGCTTCACCTACTACAAGGCAGGCAAGCAGGAGGTGACCGAGGCGGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185585_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.428 C2=0.760
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=FE(33.0=100)
A:
PF123083=Noelin-1=PD(17.0=26.1)
C2:
PF118553=DUF3375=PD(10.3=11.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTTGATGAAGGTGCACG
R:
TGCTTGCCTGCCTTGTAGTAG
Band lengths:
292-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)