BtaEX6046110 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004848 | OLFML2A
Description
olfactomedin-like 2A [Source:HGNC Symbol;Acc:HGNC:27270]
Coordinates
chr11:95794949-95800412:+
Coord C1 exon
chr11:95794949-95795056
Coord A exon
chr11:95797896-95798102
Coord C2 exon
chr11:95800166-95800412
Length
207 bp
Sequences
Splice sites
3' ss Seq
CTCAAGTCCCGCCCCTACAGAGC
3' ss Score
5.38
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTGCAGTCCATGGTGGATCTCCTGGAGGGCACCTTGTACAGCATGGACCTCATGAAAGTGCACGCCTACGTCCACAAGGTGGCTTCCCAGATGAACACATTAGAAGAG
Seq A exon
AGCATCAAGGCCAACCTGAGCCGGGAGAACGAGGTGGTGAGGGAGAGCATGCGCCACTTCAGCGAGCAGCTGAGGCACTACGAGAACCACTCAGCCATCATGATGAGCATCAAGAAGGAGCTCTCCAGCCTGGGCCTCCAGCTGCTGCAGAAGGACGCGGCCACCGCACCCGCCGCCGCCCCAGCCCCCGCCGGCAGCAAGGCTCAG
Seq C2 exon
GACACAGCTGGAGGGAAAGGCAAAGAAAACAACAAATACGGCAGCGTGCAGAAGAGCTTTGTCGACAAGGGCCTCTCGAAACCTCCTAAGGAGAAGCTGCTGAAGGTGGAGAGGCTGAAGAAGGAGGGCAAAGGCAGATTCCCCCAGCCCACAGCCAAGCCCCGGGCCCTGGCCCAGCAGCAGGCCGTGATCCGAGGCATCACCTACTACAAGGCAGGCAGGAAAGACACGACCGAGCCCATGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004848-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.507 C2=1.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=FE(32.1=100)
A:
PF123083=Noelin-1=PD(19.3=30.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTTGTACAGCATGGACC
R:
TGCCTGCCTTGTAGTAGGTGA
Band lengths:
300-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]