DreEX6051149 @ danRer10
Exon Skipping
Gene
ENSDARG00000005648 | olfml2a
Description
olfactomedin-like 2A [Source:ZFIN;Acc:ZDB-GENE-081105-107]
Coordinates
chr8:41317287-41321439:+
Coord C1 exon
chr8:41317287-41317394
Coord A exon
chr8:41317759-41317938
Coord C2 exon
chr8:41321172-41321439
Length
180 bp
Sequences
Splice sites
3' ss Seq
TCTTGATATTCTCTTCCTAGACC
3' ss Score
8.34
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTCCATTCCATGGTGGATTTGCTGGAAGGAACATTATACAGTATGGATCTGATGAAGGTTCATGCCTACATGAACAAAGTTGTGTCTCAGATGAACACATTAGAAGAG
Seq A exon
ACCATAAAAACAAATCTCACCAGGGAAAATGAGTTTGTGAGAGACAGCGTAGTAAACCTGTCCAATCAGCTGAAGCGATATGAGAACTATTCTGACATCATGGTGAGCATCAAGAAAGAGATCTCCAGCCTGGGACTACAGCTGTTGCAGAAAGACGCCGCCTCAGACAGTAAAGCACAG
Seq C2 exon
GGCACTGAGAGTAAAAAGTCCAAGGAGGCCATAAAACCACCCAACAAGAAACCCCCAGCTGTTAAACCTCCACCCAAACAGCCTAAAGAAAAACCTGTCAAGCCCAAGAAAGAGGCTCCCGCCAAAGCAGCAAAACCTGCGAAGCCAGACCCCACCACCAAAACCAAGACCTCAGTGCACCAAACGGGGGTCATCAGGGGGATCACATACTACAAAGCGTCTAAGAGCGAGGACTCAGAGTCACATTCAACGGGGAGAGCAGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005648-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.417 C2=1.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=FE(33.3=100),PF118023=CENP-K=FE(32.4=100)
A:
PF123083=Noelin-1=PD(16.2=28.3),PF118023=CENP-K=PD(50.0=90.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGGTGGATTTGCTGGAA
R:
GGTCTGGCTTCGCAGGTTTT
Band lengths:
253-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]