GgaEX6015620 @ galGal4
Exon Skipping
Gene
ENSGALG00000001048 | OLFML2A
Description
olfactomedin-like 2A [Source:HGNC Symbol;Acc:HGNC:27270]
Coordinates
chr17:9517618-9518420:+
Coord C1 exon
chr17:9517618-9517725
Coord A exon
chr17:9517896-9518081
Coord C2 exon
chr17:9518174-9518420
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCATTTCTCTCCCAGACC
3' ss Score
10.76
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
CTGCAGTCTATGGTGGACCTCCTGGAGGGAACGCTCTACAGCATGGACCTGATGAAGGTGCACTCCTACATCAGTAAGGTGGTGGCCCAGATGAACACACTGGAGGAG
Seq A exon
ACCATCAAGACCAACCTGAGCCGGGACAACGACATCATGAAGGAGAGCGTCCTGCACCTCGCCGACCAGATGAAGCGCTATGAGAACTACTCCGACATCATGATCAGCATCAAGAAGGAGATCTCCAACCTGGGCTACCAGCTGCTGCAGAAGGATGCTGCTGCCTCTCCCGACAGCAAGGCACAG
Seq C2 exon
GACACGGCAGGTGGCCGTGGGAAGGAGGCGGTGCGGTTCCCTGCTGTCCGCAAGGCGCTGCCTGCCCGCACACCCAAGGAGAAACCACTAAAGCCTGAGAAGCCCAAGAAGGAAAACGCCAAGAGAGGGGGCCCGCAGCCCACGGCCAAGCCCAAGGTGCCTGCGCAGCATCAGACTGTGGTGCGGGGCATCACCTACTACAAGGCTGGGCAGGTGGAGGAGGTGCAGAGGGCGGCCAGCAGCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001048-'5-10,'5-8,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.306 C2=0.892
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGGTGGTGGCCCAGATGAA
R:
GCCCAGCCTTGTAGTAGGTGA
Band lengths:
245-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]