DreEX6083153 @ danRer10
Exon Skipping
Gene
ENSDARG00000104539 | OLFML2A (2 of 2)
Description
olfactomedin-like 2A [Source:HGNC Symbol;Acc:HGNC:27270]
Coordinates
chr21:8072772-8079079:-
Coord C1 exon
chr21:8078972-8079079
Coord A exon
chr21:8076119-8076307
Coord C2 exon
chr21:8072772-8073033
Length
189 bp
Sequences
Splice sites
3' ss Seq
AAGTTGTTTACCACTTCCAGGTG
3' ss Score
6.13
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CTGCAGTCAATGGTGGATCTTCTGGAAGGAACTCTCTTCAGCATGGACCTTCTGAAAGTTCACTCGTATATCAACAAGGTGGTGTCTCAAATGAACAACCTGGAGGAG
Seq A exon
GTGATAAAGAGTAACCTCTCCAGAGAGAATGACTTCGTGCGGGACAGTGTGGCGACTCTGACCAATCAGTTGCGGCAATATGAGAATCACTCTGACATCATGATGAGCATAAAGAAAGAGCTGTCCAATCTGGGCCTTCAGCTGCTGCAGAAAGACTCCTCCCCCTCGAGCCCTAAAAGCAAAGCACAG
Seq C2 exon
GACACATTAGGGACAAATATCAAAGATGCGTCAAAGTTTCCAGCAAAGAGTCCTGAAAAAGGGAAACCTCCTCCAAAGCAAGTGAAGGAAAAGCCAACCAAGCCTAAAAAAGAGACCACAAAACCAAACAAACCCAGTAAAACAGAGCAAACAGAGCAGCCCGGTAAAACCAAAACATCACAGAACCAGCCAGGACTCATCCGAGGAATCACATATTACAAATCCACTAAAACTGATGAGGCGGAAAACCACAACCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104539-'2-6,'2-3,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.714 C2=1.000
Domain overlap (PFAM):
C1:
PF093116=Rab5-bind=PU(12.9=72.2)
A:
PF093116=Rab5-bind=FE(30.7=100)
C2:
PF093116=Rab5-bind=FE(43.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTCTCTTCAGCATGGACC
R:
TTTTGGTTTTACCGGGCTGCT
Band lengths:
256-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]