MmuEX0043382 @ mm9
Exon Skipping
Gene
ENSMUSG00000026904 | Slc4a10
Description
solute carrier family 4, sodium bicarbonate cotransporter-like, member 10 [Source:MGI Symbol;Acc:MGI:2150150]
Coordinates
chr2:62154622-62164787:+
Coord C1 exon
chr2:62154622-62154738
Coord A exon
chr2:62155533-62155571
Coord C2 exon
chr2:62162782-62164787
Length
39 bp
Sequences
Splice sites
3' ss Seq
TTACATTCTTTTGCCATAAGCTC
3' ss Score
2.41
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGACGACCCGTCTGTGATCAATATTTCTGATGAAATGTCAAAGACTGCCATGTGGGGGAACCTTCTAGTTACTGCTGACAACTCAAAAGAAAAGGAGTCACGCTTTCCTTCTAAAAG
Seq A exon
CTCCCCTTCCTAATCACTCTAGAAGCTGATTCCCCAAAG
Seq C2 exon
CAATGAAAGCCGAAAGGAGAAGAAAGCTGACTCAGGGAAAGGCGTTGACAGGGAGACTTGTCTATGACTTGATCTTCAATTTATTTTTTACATATATATATATGAGAAGAGTGTCACAATTATTAACAAAACTGCTTTGATCATGTAATTGTAAACCCTCTCTCCCATCCCACCTTCATACTGTAAGTAGTGCAAGCCTTCATTCTATTTCTGTGTTCAGCCTCTGAGCAGGTCGACACCCTTGTAAGCAGATCCAATAGCTAATGCAAGAGTCTCCAGTGTTACTGCCGTAAGACATTCGCCAACACAGGATTCTCATTGTTGACATTAAGAGAACAAAGCTTTCTTTAAAAGATAAGTCATATTTGCCTAGTTTGTATTTTCCTACCTTAGTAACCTGAAGATGCCTGATAATTTTATTCAGAAGAATTTTGAAAGGTAGTCGTACTTTTTATTTTTTATGGCTTAGCATTCGTTACTGGTTTTGAAAGACCCAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026904_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAAAGACTGCCATGTGGG
R:
GCCTTTCCCTGAGTCAGCTTT
Band lengths:
125-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: