GgaEX0028863 @ galGal4
Exon Skipping
Gene
ENSGALG00000011120 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr7:20678066-20684780:-
Coord C1 exon
chr7:20684664-20684780
Coord A exon
chr7:20683917-20683955
Coord C2 exon
chr7:20678066-20680355
Length
39 bp
Sequences
Splice sites
3' ss Seq
TATCACATTTCTGTCATAAGCTC
3' ss Score
3.58
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGATGATCCATCTGTGATAAACATTTCTGATGAGATGGCAAAAACTGCTGTGTGGAAGACGCTGTTGATATCCTCGGAGAATGCAAAAGATAAGGAGTCAAGCTTTCCTTCTAAAAG
Seq A exon
CTCCCCTTCCTAATCTATCTAGAAGCTGATTCCCCAAAG
Seq C2 exon
TGCTGAAATCAGACAAGAGAAGAAAGCTGACTCAGGGAAAGGTGTCGACCGAGAGACTTGTCTGTGACTTGTTCTAAACTTATTTTTTTTTTTTTTACAAATGAATGAAAGGAGTGCCACAGCCACTAAATATAACTGATTTGATCTTGTAACTTTTGTCTTTCATCTCAAACTAGCACAGGTAATGTAATGCAATATTTGTCTCTTTACCCTTTGTCTAAATGTCTACATTGTCTGCTATCTGTGCAAAAGTCTGCAGTAGCCAATGCCAAAAATCTTCATTTCCTTTGCTGGCATTGGCCATTTATCAGTATTCATATCATGAATTTAACAAGCAAAGTTTCTTTCAAATTCAACTTACCTGTTAATAGGTTTGTACTGTATTTTGCTACTTTTCCTGCTTGATAAAACTTAATCTTCACTCAAGGTGAACTTGAAACAGTTGTTCCTTTTTTTTTTTTTAATCATTTTACTGGAGGAAGTGATTTTAGGAGACCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120_MULTIEX1-1/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000018117fB3627
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGGAAGACGCTGTTGA
R:
ACACCTTTCCCTGAGTCAGCT
Band lengths:
115-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]