GgaEX0016679 @ galGal4
Exon Skipping
Gene
ENSGALG00000011120 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr7:20678066-20684780:-
Coord C1 exon
chr7:20684664-20684780
Coord A exon
chr7:20681307-20681332
Coord C2 exon
chr7:20678066-20680355
Length
26 bp
Sequences
Splice sites
3' ss Seq
TTATTTCTCATTCATTCTAGTTA
3' ss Score
8.19
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
AGATGATCCATCTGTGATAAACATTTCTGATGAGATGGCAAAAACTGCTGTGTGGAAGACGCTGTTGATATCCTCGGAGAATGCAAAAGATAAGGAGTCAAGCTTTCCTTCTAAAAG
Seq A exon
TTAAGGAATTATTCCCATGAAAACTG
Seq C2 exon
TGCTGAAATCAGACAAGAGAAGAAAGCTGACTCAGGGAAAGGTGTCGACCGAGAGACTTGTCTGTGACTTGTTCTAAACTTATTTTTTTTTTTTTTACAAATGAATGAAAGGAGTGCCACAGCCACTAAATATAACTGATTTGATCTTGTAACTTTTGTCTTTCATCTCAAACTAGCACAGGTAATGTAATGCAATATTTGTCTCTTTACCCTTTGTCTAAATGTCTACATTGTCTGCTATCTGTGCAAAAGTCTGCAGTAGCCAATGCCAAAAATCTTCATTTCCTTTGCTGGCATTGGCCATTTATCAGTATTCATATCATGAATTTAACAAGCAAAGTTTCTTTCAAATTCAACTTACCTGTTAATAGGTTTGTACTGTATTTTGCTACTTTTCCTGCTTGATAAAACTTAATCTTCACTCAAGGTGAACTTGAAACAGTTGTTCCTTTTTTTTTTTTTAATCATTTTACTGGAGGAAGTGATTTTAGGAGACCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120_MULTIEX1-3/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000018117fB1953
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGGAAGACGCTGTTGA
R:
ACACCTTTCCCTGAGTCAGCT
Band lengths:
115-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]