GgaEX1053554 @ galGal4
Exon Skipping
Gene
ENSGALG00000011120 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr7:20681307-20684780:-
Coord C1 exon
chr7:20684664-20684780
Coord A exon
chr7:20683172-20683454
Coord C2 exon
chr7:20681307-20681332
Length
283 bp
Sequences
Splice sites
3' ss Seq
TTATTCCTTTCCCTAAACAGCAT
3' ss Score
9.77
5' ss Seq
CCTGTGGGT
5' ss Score
1.37
Exon sequences
Seq C1 exon
AGATGATCCATCTGTGATAAACATTTCTGATGAGATGGCAAAAACTGCTGTGTGGAAGACGCTGTTGATATCCTCGGAGAATGCAAAAGATAAGGAGTCAAGCTTTCCTTCTAAAAG
Seq A exon
CATAAACAAGATGAACAGTGGATGACTACAGAATCTTCGTTTCAAACAACCATGGATCAGCACATTAATTTTAATGCTATTTTACTGACAGACAAAATAACGATCTAGTTCTGCTTTGTCCTCTGCCCTATGTGTGGGCTAAAACAATCCTGTCACAGTGGTATTGGTGTGGCACACAAGAGGAGGATGTACAATATGATTTTCTTACCTTACATGCCTCTGCTGCCCAGGCAGTGCAAGACTGGAGAAAGAGAAGAAACTGATGTGGGTACATTCACTGCCT
Seq C2 exon
TTAAGGAATTATTCCCATGAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120_MULTIEX1-2/3=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=0.875 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000018117fB12103
Main Skipping Isoform:
ENSGALT00000018117fB1953
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]