DreEX0073004 @ danRer10
Exon Skipping
Gene
ENSDARG00000063133 | slc4a10a
Description
solute carrier family 4, sodium bicarbonate transporter, member 10a [Source:ZFIN;Acc:ZDB-GENE-100215-3]
Coordinates
chr11:10685769-10702129:-
Coord C1 exon
chr11:10702019-10702129
Coord A exon
chr11:10699587-10699623
Coord C2 exon
chr11:10685769-10689068
Length
37 bp
Sequences
Splice sites
3' ss Seq
TGAATTTTTCATCCCATAAGCTC
3' ss Score
2.92
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGACGATCCATCCACAGTCAACATCACAGATGAAATGACAAAGACATCTTTTGGAAATGTCTGGAAAGGCCTAAACCCTGAAAGCGCCAACAAAGAAGAAAGCTCAAAAAG
Seq A exon
CTCCCTGTCCTAATGTCTCAGATGCTGATTTCTGAAG
Seq C2 exon
CTCAACAGTTATGGGTGCCACTGGACAAGAGCGAAGCGATGAAGACAAAGAGAACGATTTGGATAGAGAGACGAGTTTGTGAGTTGATGTATTTGGAAACTCTCTGTATCGTGCCACACTACAAGCACTACTTTATGCTTCTGTTCTGTAGGTCTGTGTGTGCCAGTCTGTGCCCAGGCACTTGTTGTATTTACATGTTATATTTACATGTTTTTATATATGTTTGAGCGCGTGTGTGGAGATGAGTGCGACTGAATTTGTATGATTGAATCTGCCACCCACAAGGACGATTGTTGGGTTGCGTTTTCCAGTCTAACGGTCCAATTGTAGTTTCACCTGTAGGTAAATAAAATAAGGTTACTTTTGTTTTCAGCCAGGTAGACCGTATTTTGTATGTTTTATAATTTTTTTGACTGTAGATCCTATTGAAATCTCTCGTCTTATAGCCTGTACGTGTTTTTAATATACAATTCATTTTTTTTATTACACATAAATGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063133_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCACAGTCAACATCACAGA
R:
CCAGTGGCACCCATAACTGTT
Band lengths:
128-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]