HsaEX0059790 @ hg19
Exon Skipping
Gene
ENSG00000144290 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:13811]
Coordinates
chr2:162833270-162841763:+
Coord C1 exon
chr2:162833270-162833386
Coord A exon
chr2:162834232-162834270
Coord C2 exon
chr2:162839689-162841763
Length
39 bp
Sequences
Splice sites
3' ss Seq
TATTACATTTTTGTCATAAGCTC
3' ss Score
3.45
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGATGATCCATCTGTGATCAATATATCTGATGAAATGTCAAAGACTGCCTTGTGGAGGAACCTTCTGATTACTGCCGATAACTCAAAAGATAAGGAGTCAAGCTTTCCTTCCAAAAG
Seq A exon
CTCCCCTTCCTAATCACTCTAGAAGCTGATTCCCCAAAG
Seq C2 exon
CATTGAAAGCCGAAAAGAGAAGAAAGCTGACTCAGGGAAAGGTGTTGACAGGGAGACTTGTCTATGACTCGATCTTCAATTTATTTTTTACATATATATGAGAAGAGTGTCACAATTATTAATAAAACTGCTTTGATCATGTATTGTAAATTCTGTCCCTCAACCCAAATCCACCTTCATACTGTAAGTAGTGCAATACTTGTTTCATTTCTGTGTTTAAACTTCTGAGCAGTGAGACATCCCTGTGAGCAGATACAATAGCCAATGCAAGAATCTGTGTGTTCCTTGCTGTACGTTAGACATTTGTAAACTGGATTCTGATTGTCAGTTTTATGAGAGCAATAGCTTCCTTAAAGAGATAAGTCATATTTACCTAGTTTGTATTTTCCTACTTTAGTGACCTGAAGATGCCTGATAATTTCATTCAGAAGAATTTTTGAAAGGTAGTCTTACTTCTTTTTAGTTTTTATAGCTTAGCATTAGTGACTTATTTCAAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144290_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAAAGACTGCCTTGTGGA
R:
ACACCTTTCCCTGAGTCAGCT
Band lengths:
127-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)