RnoEX0082787 @ rn6
Exon Skipping
Gene
ENSRNOG00000005307 | Slc4a10
Description
solute carrier family 4 member 10 [Source:RGD Symbol;Acc:631407]
Coordinates
chr3:48278991-48287910:+
Coord C1 exon
chr3:48278991-48279107
Coord A exon
chr3:48279881-48279919
Coord C2 exon
chr3:48285893-48287910
Length
39 bp
Sequences
Splice sites
3' ss Seq
TTACATTCTTTTGTCATAAGCTC
3' ss Score
3.41
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGACGACCCATCTGTGATCAATATTTCTGATGAAATGTCAAAGACTGCCATGTGGGGGAACCTTCTAGTCACTGCTGACAACTCAAAAGAAAAGGAGTCACGCTTTCCTTCTAAAAG
Seq A exon
CTCCCCTTCCTAATCACTCTAGAAGCTGATTCCCCAAAG
Seq C2 exon
CATTGAAAGCCGAAAGGAGAAGAAAGCTGACTCAGGGAAAGGCGTTGACAGGGAGACTTGTCTATGACTTGATCTTCAATTTATTTTTTACATATATATGAGAAGAGTGTCACAATTATTAATAAAACTGCTTTGATCATGTCATTGTAAGCCCTGTCTCCCATCCCAAATCCACCTTCATAAGTAAGTAGTGCCACCCTTCGTTCTGTTTGTGTTCAGCCTCTGAGCAGGTCAACACCCTTGTGAGCAGATCCATAGCTAAGGCAGGAGTCTCCATGTTACTGCCGTAGGACATCCGCCAACACACAGTTCTCATTGTTGGCATTAGGAGAGCAAAGCTTTCTTTAAAATATAAGTCATATTTGCCTAGTTTGTATTTTCCTACCTTAGTAACCTGAAGATGCCTGATAATTTTATTCAGAAGAGTTTTGAAAGGTCGTATTACTTTTTCATTTTTATGGCTTAGCATTCGTGACTGGTTTTGAAAGACCCAAATAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005307_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=1.000 C2=0.742
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAAAGACTGCCATGTGGG
R:
GCCTTTCCCTGAGTCAGCTTT
Band lengths:
125-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]