RnoINT0138408 @ rn6
Intron Retention
Gene
ENSRNOG00000005307 | Slc4a10
Description
solute carrier family 4 member 10 [Source:RGD Symbol;Acc:631407]
Coordinates
chr3:48278991-48279549:+
Coord C1 exon
chr3:48278991-48279107
Coord A exon
chr3:48279108-48279539
Coord C2 exon
chr3:48279540-48279549
Length
432 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGA
5' ss Score
5.64
3' ss Seq
ATTTTCAAGTTCCTGACAAGGTC
3' ss Score
0.44
Exon sequences
Seq C1 exon
AGACGACCCATCTGTGATCAATATTTCTGATGAAATGTCAAAGACTGCCATGTGGGGGAACCTTCTAGTCACTGCTGACAACTCAAAAGAAAAGGAGTCACGCTTTCCTTCTAAAAG
Seq A exon
GTTGGAATTTTGAAATAATAAGGTTATATTAATTAATGTTTTATGGTATAAATTCACCAGATTGATTCAACAGATACTATTGATTTTAATAAAAATTAAAGTTAAAATATTTCAGATTTTTTTTCTAAAGGGAGAATGACAATTTTTATAAGCATTATGCTTCTCACTCAGTGTCTTCCTTTCAAATTAAAGCTCACTCCAAAACCATGACAGTGGGGGGGAAATGGAGCTGTTAATGACCCCGTGCATGGCGGTTTTCAACATTCATTCTGGCCCACTCTTTGTTTGTGTGGTTTCATGGATTTCATCACACATTCCCAGGACTACTGAGGCTCCCCACTTCCTACTCCTTTGTGGCAATGATTTGGCACATGAAATGGTCATTCTACATTTACTTGATTTCCAGTTCCCTATTTTCAAGTTCCTGACAAG
Seq C2 exon
GTCCCCTAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005307:ENSRNOT00000007218:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]