GgaINT0048929 @ galGal3
Intron Retention
Gene
ENSGALG00000011120 | SLC4A10
Description
NA
Coordinates
chr7:22761191-22766045:-
Coord C1 exon
chr7:22765929-22766045
Coord A exon
chr7:22761623-22765928
Coord C2 exon
chr7:22761191-22761622
Length
4306 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTTA
5' ss Score
0.84
3' ss Seq
TTTCCCTCTTCTTTTTCTAGTGC
3' ss Score
11.44
Exon sequences
Seq C1 exon
AGATGATCCATCTGTGATAAACATTTCTGATGAGATGGCAAAAACTGCTGTGTGGAAGACGCTGTTGATATCCTCGGAGAATGCAAAAGATAAGGAGTCAAGCTTTCCTTCTAAAAG
Seq A exon
GTTTTAATTTTTTTTTTTCCTACTATGTTGTGTTTTACATATTAGATTCAAACCAATATTAGAACATTTTGCTAGGGATCAGAAAGATTTCTAGCATCTTGCAGTTTTAGTTCTTGAGGTTTCCTTTTGCTTCTGTCCAGTCAAATATTCTAAGGTCCAAACACAGATTCACTATGTGTGTTTATTAAAACAAACAAACAAACAAAAAAAACACCACGACACAAATATTTGCATGCAACTTAGTTATGCTACAGTGGAAAATGAAGTTGAGCATGCTTGATGCTTGTGTAATGAACCAGCAGCCTACACCTGGATATTGCACAACAGCTGTTCTGTTTGTTCTGCTTGCTTTTGTTCTCCCCTCTTGAAAAAGAAGTGGTCATCACTGCCCTGGAAATAGCTATTTGAAGAGCCCGGTATTTTGATGTGATCTACTAATATTGGAGTGAAAATAATTTAAAGATTGCATCACTTCTGGTCACTTTTTTTCACGCCTACTTCAACTGTACTCAAAATACTTAAATATCTTTTAAGATTAATCCACAAAAAATGTAAAATGAACCAATGATATTTTGTATAGAGGAGTATAATGGGAATAAGGAAGTATAAGTGCAGTGCTATTGTAAATAAGATTTTCCAATTCTATAAATTTAAAATGTAACAGTATTTTCTACTTAATTGTTTCATATCACATTTCTGTCATAAGCTCCCCTTCCTAATCTATCTAGAAGCTGATTCCCCAAAGGTAAGACCCTGTCCCCCAAACTTTTCCTTGGTTGTATCTTCCAATTCAAAGTGGTGTTGTCTAGGAACCCAAGTGACTCGACTTTGTGTAATTTTTGGGGAGACAGAATGAAAAGAAATTTGGAATAGGAATGTGCAAACGTTTTCTTCAAATCCCTTTACCGTTATAAAATTTGAATTTTATTATATTAAAAGTAGAAACTGTAGATGTTAAATGCTAAATTGAACTTTTTGTCAGTAGCACTGACTTTTTTTTAAAATGCGAAGTGATATTCTGCCTGATATATAAGTGATATTCTGAAGTCTCATGTTCAAAACAAGTTCCATGTTTGAAATATCTAGTCATTGTTTTATGGTGAAGAGATGCACTAAGGGAAAACAATTTGTACTGAAATACTGCTTTTTAATTTTGTCACCCCAAAATGGCATGCTGCCTTTCAGTGTTATTCCTTTCCCTAAACAGCATAAACAAGATGAACAGTGGATGACTACAGAATCTTCGTTTCAAACAACCATGGATCAGCACATTAATTTTAATGCTATTTTACTGACAGACAAAATAACAATCTAGTTCTGCTTTGTCCTCTGCCCTATGTGTGGGCTAAAACAATCCTGTCACAGTGGTATTGGTGTGGCACACAAGAGAAGGATGTACAATATGATTTTCTTACCGTACATGCCTCTGCTGCCCAGGCAGTGCAAGACTGGAGAAAGAGAAGAAACTGATGTGGGTACATTCACTGCCTGTGGGTATTCAGGAGTTGCAATTTTTCTGATAGATATTATCTTCTTTGATGGTATGATAAATTATGTAGACTTGTAATTCTTTACCTGAGATTTTCAAGGATACTCTGAGCAAAGAGCAATCTACATAGGCTGCGGCTCAGACAACAGTGGTAAAAGATGGTTTTGCTTTGAGCTACTATTTTGCTGCAGTGTAACTTTCTCAAAAGCTTCTTTGGTTCAACCTAGATTTTTATTCTTTTCCTGTATCTTTGCTCACAAAACCAAGGACTCAAGTGAAAAGGATCACTGATAGATTTTAGCTATGAATGCCCTGTTGCAAATGAATAACCTTGTGAGGAATCTGAAATCCTTTTTCATGTGCTCTAGCTTGTCTCAGATTCCCAGATGGAAGTAAATTCAAAGAACTTTGAATGTGGAGGGCTTGCTTGTTATAACAGACAATATAAGACAGATCTTATGTTAGAGAGGCAACTAAAAAAAAACATTAAAGTCCTGAATGCACAAATGATTACATTAAAAATAACTTTGTCCTAGGTAAGCACTGAAAAAAAGGAAAGCTTAGGATGGTAGCAGTCATAAAGATAATTTTTTTGTAAATGACCAAATACCACACAATTGCCTTCACTGAGGAGTGTCTTACCATAGGAAGGTGGGTGGGAAAACATTTTATTGTTTTGTAATTAATGGTATTTTTAGATACTGGTATAAGAAAGTATATGTGACAGTAGGAAAAGGACTACTATGTACTTCTGTAGTTGAACTTTAAAAATTATGATAGTGTGTTATTATTTCATGTAATGCCTTCTAAACTGGGGAATGATCAATTAACAATGCAGAACTATTTTCAAAATATATCAAATCTGAAAGTACTTCCCACTAATTAAATACTGAGTTGACTTGAGCAATGACAGACCGGTCAATAATAAGCTACAGTGATCTCAGAGATTTTAGGCAGGTAGGGGTTGCAGAAACAACTCAGCCTGATCTGTGTCTGCTGTAAGCTCTGCCCTGCCCCTAGCTCTTTGAAACAATGGGGAAACAAAGGAGTATGTGACAATTCTAACATCACAGACTCTCAATGGTATTAAACATCTGAAGAGGTTACTTGCTTGAGATTTACTTAGCAGCCATCTAACCATGCAGGCAGCTGAGCTCTACCTTGATACCTTAACTGTTTGTTATTAAAGTGCCTAGGGATCTGAAAGTCTGCCTTTGAGTACAGCCTGACCTGATAGGTGCCCTGGTGCTCAATTCTATCTTCTGCCTTTGCCTATAATATTAAATCTGTCAGGCAGCAATTTCAAAACATATGGAGAAGATCTGACCATAGTTCTAGCTGTCCTAACCCACATCTGTAGGAGATGCAAATCCTAAATAGAAGGAAGATTTTCCTGGTATCAGAGGCAGCTAAAGCCTGAAAATAGTGTAGTCCTTAAAGCACACAACATATCCTCAGCGTTTGCTCTTGCTAAGCATAGGTAACTGCCAGCTGTACTGTTGCATTTTAAATTAATCCCCAGGAATTTGTTTGCATGTCCTTTGTGTGCAGGGAGTGTGTACGTACCCAGTCCTATCACTGTTCTACAGAAGGTGACAGATTTGGCAGTTGAAGTGGCAGAAGTTGGTATCCTTCAGTTATTTCCATTAACACCTCTAGAAGCAGCCATAGGCAGAGAAGTAAGCTTTGGCTGAATAGAATTGTATCCTTAAAGCAATTTTAATGTGAAGAAAAATGTCAGATGATTGTAAAATTGTTCATGATCACCTTAAGAATTTGAGAATTGATCTTGCTTTCTTTTACGCCTTGTTTAACTTAGCTTATTTCTCATTCATTCTAGTTAAGGAATTATTCCCATGAAAACTGGTAGGTTGTGCTTGATAGAGGTTTGTTCTCAGAAACATCTGTTTAGATACCCTGCCCCTCTTTGTTGAAGGCTTGATTTGCCTTTGTTGTGGCATTTCTTGTATTCTTGCTTTCTTGTAGCATGACTAAAACTCACTGTAACAACTGGGCTTGTTATTTTAATTTACATATTTATGCTGTTGTAAATTAGGACTTTCTTCACAAAAAAGAGTATCATCTGCTTTGCACATATATTGTTTTCTTGTAGGCAAATCAACAGTGTTTTAATTGGGGAAAAAAAAAAAAAAACAGAATCCAAATTTGAACTCTGCTTCTATGTGATCGAACGTTTAGGATGATCAAAAATAAAATAAAATAAAAAATCAAACCACAAGCAAATACATTATTTCTTGTACGTGTATGTGAGCAAGTATATACTAAACTGAGATCCAAGCAGGGAATATTGTCATCTCCCTGCCCCACTGCCATCTCCTGCTCGCCCTGGGGAAGACTGAAAGCCAAATATTACAGCTATAAATTGGCTTACTCTGCTTTACTTCTGAAATGTTCCTTCCAAATGTATAAGCAACAGACTATGTGTTAAAGAAATACTTACTGTAACCTCTTGTTTGTGCCATTTAAGAAAATGCCGGTATTGTCTGGGAACTGTATGTTATCACTATTTAACTAACAGTTGTATTTGCCAAAAAAAAAGTGCCTACCTGCTTGCATGCTGGCTGACTTGTCTTTCTGTACATCTTAAGTTCTCCACTCACCTCATCACTAAACTGCTGACTGATGTCTTCTGCACCATTCAACTCAGCAGCTTTCACTTTTTTCCCAGTTTGTGTTATGCAGCATGTAAAATTAATTGCAATATCAGTGCAGTATTGGTTTTCAGATCTGTATATATATAAAATATATGTATGAGAGTGCGGCTGCAACATTTTTTTTTCCCTCTTCTTTTTCTAG
Seq C2 exon
TGCTGAAATCAGACAAGAGAAGAAAGCTGACTCAGGGAAAGGTGTCGACCGAGAGACTTGTCTGTGACTTGTTCTAAACTTATTTTTTTTTTTTTTACAAATGAATGAAAGGAGTGCCACAGCCACTAAATATAACTGATTTGATCTTGTAACTTTTGTCTTTCATCTCAAACTAGCACAGGTAATGTAATGCAATATTTGTCTCTTTACCCTTTGTCTAAATGTCTACATTGTCTGCTATCTGTGCAAAAGTCTGCAGTAGCCAATGCCAAAAATCTTCATTTCCTTTGCTGGCATTGGCCATTTATCAGTATTCATATCATGAATTTAACAAGCAAAGTTTCTTTCAAATTCAACTTACCTGTTAATAGGTTTGTACTGTATTTTGCTATTTTTCCTGCTTGATAAAACTTAATCTTCACTCAAGGTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120:ENSGALT00000018117:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.183 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]