HsaINT0153333 @ hg38
Intron Retention
Gene
ENSG00000144290 | SLC4A10
Description
solute carrier family 4 member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr2:161976760-161977760:+
Coord C1 exon
chr2:161976760-161976876
Coord A exon
chr2:161976877-161977721
Coord C2 exon
chr2:161977722-161977760
Length
845 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
3' ss Seq
TATTACATTTTTGTCATAAGCTC
3' ss Score
3.45
Exon sequences
Seq C1 exon
AGATGATCCATCTGTGATCAATATATCTGATGAAATGTCAAAGACTGCCTTGTGGAGGAACCTTCTGATTACTGCCGATAACTCAAAAGATAAGGAGTCAAGCTTTCCTTCCAAAAG
Seq A exon
GTTTGGATTTTAAAATAATGAGAATTTATACTAATTCCAATTGTTTTTTGACATAAACCATAAGCAAAAGAATAATATTAGTTTCCATCAAATTTAGATATAAAATATTCCAGAAAATTCTTTCCAAAAGTGGGTAGAAATTGTAATTATTTCAAATGTTGGTATGTTTTTCATACCAACTGTGGTATGGGGAACTGTGCTAGAAATGAGTCACAATGCATGACATTTTTGGACATTCATCTTGGCCTACTGTTTTTCAGTATGATTTTATTTTATTCCCTCATCACCCACTTCCCCCAGGACCCCTTTAGACATCTGGCCACATTTTGCACTCCTTTATTTTCCCTTTTTTAGACTGATATGCACTGTGTGTATTTTATATTTATATTTTATAAATATGCATAAATATTTATATTTAGTATAGTTCTAGTCCTGACTCCAACCCCCTGAAAGTCTTCCCTAAACTTCTTATCCCAAAACTTTCAACTCCTGAAAGTTCTATCCATTCTTTCTTCTCTGTGTGTAAATGTACAAACAACTCCTGTAGTTGTGGATGGTAGTTTTAAGTGCATGCTGGAGGAAGAGTGTGTCCCTAAATATCAACAGTCATCAAAGGATTTCCAAGTGAATCTTCTAGGATTTATAAATAAGAGTTCAAGTCACCCAGTCTTCTTAGATGCTGATCTGAAGAAAGAGGAATTCCTATGTTATGCTAATATCTCTTTTTGTTAGAGAGTGATTGAGGGAATTGGGACAGTGTTTACTATAATTATAAAGTTCCTTTATTTTCGTAACCTTAAATTAACTTTTTCTACTTAATTTTTATATTACATTTTTGTCATAAG
Seq C2 exon
CTCCCCTTCCTAATCACTCTAGAAGCTGATTCCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144290:ENST00000415876:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains