MmuINT0147094 @ mm10
Intron Retention
Gene
ENSMUSG00000026904 | Slc4a10
Description
solute carrier family 4, sodium bicarbonate cotransporter-like, member 10 [Source:MGI Symbol;Acc:MGI:2150150]
Coordinates
chr2:62316565-62317514:+
Coord C1 exon
chr2:62316565-62316681
Coord A exon
chr2:62316682-62317475
Coord C2 exon
chr2:62317476-62317514
Length
794 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGA
5' ss Score
5.64
3' ss Seq
TTACATTCTTTTGCCATAAGCTC
3' ss Score
2.41
Exon sequences
Seq C1 exon
AGACGACCCGTCTGTGATCAATATTTCTGATGAAATGTCAAAGACTGCCATGTGGGGGAACCTTCTAGTTACTGCTGACAACTCAAAAGAAAAGGAGTCACGCTTTCCTTCTAAAAG
Seq A exon
GTTGGAATTTTGAAATAATAAGGTTATATTAATTAATGTTTTATGGCATACATTTACCAGATTGATTCAACAGATACTATTGATTTTAATCAAATTTAAAGTTAAAATATTTCATAATTTTTTCTAAAGGGAGAATGACAATTTTTACAAGCATTATGCTTCTCAGTGTCTTCCTTTCAAATTAAAGCTCACTCCAAAACTACGACAGTGGGGGGGAAATGGAGCTATTAATGACCCCAGTGCATGATGGTTTTGAACATTCATTCTGGCCCACTCTTTCTTTGTGTGGTTTCATTGATTTCTTCATCACACACTCCTAGGACGACTGTAGGTCCCAGATCACATTCTCCACTTCCTACTCCATTGTGGCAATGATTTGGCACATGTAATGGTCGTTCTACATTTAGTTGATTTCTACTTCCCTACTTTCAAGTTTCTGACAAGCTCCCCTACCCTTATCCTGAGCATCCATCTGTTCTCATCTGTCTGTAGACACATGAGCAGTCTGTAGCTGTGCATGCTGAGACAGGAGATGCTTTTAAGTAGTGAGAGAATCCTGGTATTTCAGTTGAATTTTCCAGAATTTATAAATGAGTTTGGACTGTACCAGGCAGCCAAGCCATCTTAGATGCTGAATAGAAGAAAAGAAGGTCCTGTGTTATGCTAGTTTTGTTTCTCATAAGAAAAAGGTGGATGTTTGGGGATAGTGTGATAATGATTTAATTTATTTATTTTTTTATAACTTTACATTAACTTTTCTACTTAATTTTTATATTACATTCTTTTGCCATAAG
Seq C2 exon
CTCCCCTTCCTAATCACTCTAGAAGCTGATTCCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026904:ENSMUST00000102735:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types