HsaINT0153333 @ hg19
Intron Retention
Gene
ENSG00000144290 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:13811]
Coordinates
chr2:162833270-162834270:+
Coord C1 exon
chr2:162833270-162833386
Coord A exon
chr2:162833387-162834231
Coord C2 exon
chr2:162834232-162834270
Length
845 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
3' ss Seq
TATTACATTTTTGTCATAAGCTC
3' ss Score
3.45
Exon sequences
Seq C1 exon
AGATGATCCATCTGTGATCAATATATCTGATGAAATGTCAAAGACTGCCTTGTGGAGGAACCTTCTGATTACTGCCGATAACTCAAAAGATAAGGAGTCAAGCTTTCCTTCCAAAAG
Seq A exon
GTTTGGATTTTAAAATAATGAGAATTTATACTAATTCCAATTGTTTTTTGACATAAACCATAAGCAAAAGAATAATATTAGTTTCCATCAAATTTAGATATAAAATATTCCAGAAAATTCTTTCCAAAAGTGGGTAGAAATTGTAATTATTTCAAATGTTGGTATGTTTTTCATACCAACTGTGGTATGGGGAACTGTGCTAGAAATGAGTCACAATGCATGACATTTTTGGACATTCATCTTGGCCTACTGTTTTTCAGTATGATTTTATTTTATTCCCTCATCACCCACTTCCCCCAGGACCCCTTTAGACATCTGGCCACATTTTGCACTCCTTTATTTTCCCTTTTTTAGACTGATATGCACTGTGTGTATTTTATATTTATATTTTATAAATATGCATAAATATTTATATTTAGTATAGTTCTAGTCCTGACTCCAACCCCCTGAAAGTCTTCCCTAAACTTCTTATCCCAAAACTTTCAACTCCTGAAAGTTCTATCCATTCTTTCTTCTCTGTGTGTAAATGTACAAACAACTCCTGTAGTTGTGGATGGTAGTTTTAAGTGCATGCTGGAGGAAGAGTGTGTCCCTAAATATCAACAGTCATCAAAGGATTTCCAAGTGAATCTTCTAGGATTTATAAATAAGAGTTCAAGTCACCCAGTCTTCTTAGATGCTGATCTGAAGAAAGAGGAATTCCTATGTTATGCTAATATCTCTTTTTGTTAGAGAGTGATTGAGGGAATTGGGACAGTGTTTACTATAATTATAAAGTTCCTTTATTTTCGTAACCTTAAATTAACTTTTTCTACTTAATTTTTATATTACATTTTTGTCATAAG
Seq C2 exon
CTCCCCTTCCTAATCACTCTAGAAGCTGATTCCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144290-SLC4A10:NM_001178016:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)