MmuEX0044721 @ mm9
Exon Skipping
Gene
ENSMUSG00000057738 | Spna2
Description
spectrin alpha 2 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:29839134-29841818:+
Coord C1 exon
chr2:29839134-29839280
Coord A exon
chr2:29839807-29839916
Coord C2 exon
chr2:29841685-29841818
Length
110 bp
Sequences
Splice sites
3' ss Seq
TATTTATTTGGTTTTTCAAGACA
3' ss Score
3.71
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
Exon sequences
Seq C1 exon
GAAGCAATTGTGACTTCTGAGGAGCTGGGCCAGGACCTGGAGCATGTAGAGGTGCTACAGAAGAAGTTTGAAGAGTTTCAGACTGATCTGGCTGCTCATGAAGAAAGAGTTAATGAAGTGAGCCAGTTTGCTGCCAAACTCATCCAG
Seq A exon
ACAGGGTTTCTCTGTATAGTCCAGGCTGTCCTGAAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAG
Seq C2 exon
GAGCAGCACCCGGAAGAGGAGCTGATCAAGACCAAGCAGGATGAGGTGAATGCAGCATGGCAGCGACTGAAAGGCCTGGCTCTTCAAAGGCAGGGCAAGCTGTTCGGTGCTGCTGAGGTCCAGCGCTTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(64.9=100),PF064417=EHN=FE(56.5=100)
A:
PF0043516=Spectrin=PD(5.4=25.0),PF064417=EHN=PD(8.2=43.8)
C2:
PF0043516=Spectrin=PD(32.7=75.6),PF0043516=Spectrin=PU(6.7=15.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTGGAGCATGTAGAGGT
R:
TGTTAAAGCGCTGGACCTCAG
Band lengths:
248-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: