MmuEX0027376 @ mm9
Exon Skipping
Gene
ENSMUSG00000026765 | Lypd6b
Description
LY6/PLAUR domain containing 6B [Source:MGI Symbol;Acc:MGI:1919147]
Coordinates
chr2:49643208-49758972:+
Coord C1 exon
chr2:49643208-49643293
Coord A exon
chr2:49719331-49719426
Coord C2 exon
chr2:49758896-49758972
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTTTTCTGTTGCAGAGT
3' ss Score
12.23
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CACAGCCATCGCCAGCCCGGAGCGGGTGTCTGGAGCCCAGGCCGGGAGCCGAGCGAGGCGCCGGGAGCCGGCCGGCGTCCGCGCAG
Seq A exon
AGTTATGAATAATCCCTGATTGCTGTCGTGCTGAGTGGGTAAATGACAAAGGGCAGAGGGAATTTTGGTGTCAGACGCCTGCTTTCTCCAACTCTG
Seq C2 exon
ACTGCTTTACTTTGTTGGATGAAGACCTGTTCCCTGCCGCCGTGTAGAGACCAACTAACCAGGTTGTCTTTCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026765-'0-6,'0-4,4-6
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCGGGTGTCTGGAG
R:
AAGAAAGACAACCTGGTTAGTTGGT
Band lengths:
143-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: