MmuEX0027376 @ mm10
Exon Skipping
Gene
ENSMUSG00000026765 | Lypd6b
Description
LY6/PLAUR domain containing 6B [Source:MGI Symbol;Acc:MGI:1919147]
Coordinates
chr2:49787688-49930984:+
Coord C1 exon
chr2:49787688-49787773
Coord A exon
chr2:49863811-49863906
Coord C2 exon
chr2:49930925-49930984
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTTTTCTGTTGCAGAGT
3' ss Score
12.23
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CACAGCCATCGCCAGCCCGGAGCGGGTGTCTGGAGCCCAGGCCGGGAGCCGAGCGAGGCGCCGGGAGCCGGCCGGCGTCCGCGCAG
Seq A exon
AGTTATGAATAATCCCTGATTGCTGTCGTGCTGAGTGGGTAAATGACAAAGGGCAGAGGGAATTTTGGTGTCAGACGCCTGCTTTCTCCAACTCTG
Seq C2 exon
GTGTCCTTGAATGAGAGAAACAAGGACTAGAAGAGGAGGAAGAAGACTTGGGTAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026765_MULTIEX1-3/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCGGGTGTCTGGAG
R:
TCCTTACCCAAGTCTTCTTCCTCC
Band lengths:
127-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types