MmuALTD0003197-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000039205 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:1920234]
Coordinates
chr2:32226429-32226928:+
Coord C1 exon
chr2:32226429-32226621
Coord A exon
chr2:32226622-32226633
Coord C2 exon
chr2:32226769-32226928
Length
12 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
AGACACAGGCACATCCACAGGTA
3' ss Score
-1.15
Exon sequences
Seq C1 exon
AAGGGTCCAGCCTCAGACCCAGATGACAGCACCAAAGCAGACACAGACCCCGGATCGGCTGCCTGAGCCACCAGAAGTCCAAATGCTGCCGCGTATCCAGCCACAGGCACTGCAGATCCAGACCCAGCCAAAGCTGCTGAGGCAGGCACAGACACAGACCTCTCCAGAGCACTTAGCGCCCCAGCAGGATCAG
Seq A exon
GTAGAGCCACAG
Seq C2 exon
GTACCCACCCAAGCACAGTCACAGGAGCAGACATCAGAGAAGACCCAGGACCAGCCTCAGACCTGGCCACAGGGGTCAGTACCCCCACCAGAACAAGCGTCAGGTCCAGCCTGTGCCACGGAACCACAGCTATCCTCTCACGCTGCAGAAGCTGGGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039205-18-23,19-23-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACAGACCTCTCCAGAGC
R:
CTGGTCCTGGGTCTTCTCTGA
Band lengths:
98-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: