MmuINT0098058 @ mm9
Intron Retention
Gene
ENSMUSG00000051730 | Mettl5
Description
methyltransferase like 5 [Source:MGI Symbol;Acc:MGI:1922672]
Coordinates
chr2:69709252-69709838:-
Coord C1 exon
chr2:69709789-69709838
Coord A exon
chr2:69709374-69709788
Coord C2 exon
chr2:69709252-69709373
Length
415 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
AATTTTTTCCTTTTATACAGGTG
3' ss Score
9.75
Exon sequences
Seq C1 exon
AGCTTCGATATGATCTACCAGCATTATACAACTTTCATAAAAAGAAATCT
Seq A exon
GTAAGTTTTCCAATTGTAGTCTGTGTACATCCAGTATTCAAAAGCTTTTGTAATGGTCATTTCCACTCTTACCAAGGTAAATGGGTAAATATAAAGTCAGCCTGAGAGATTAGACAAATTAGCTGTGGGAAGAAGGGCTTATACTCGCAAGAGTCAATATTTTAGTTGAAGTTCTTTGTGAAACGTTTTAAGAGAAATAAAAAGAAGAAAGAACTATTGGCTATTTTTATACAGTATATATTTTACAAGTCTGTACTAATACATTCTCATATTACAAAGGCAATTAAGAGGAAGAATCTTCCTTCTCATATTTTAATCATCCAAACACAAACAGAACTATACATTTTAAAAAACTTTCATTTGGATAACAACAAAAAGAAGACAAGTAAAACAAAAATTTTTTCCTTTTATACAG
Seq C2 exon
GTGGACATCGAAGTGGACCTAATTCGCTTTTCTTTTTAAAAGCTTCTGAAGACAAAAAGCAGCTTAAAATCTAACTAAGGAATAAAAACACTGCTTACTAAATAAACTACTTGTCTCTAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051730-Mettl5:NM_029280:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: