GgaINT0048463 @ galGal3
Intron Retention
Gene
ENSGALG00000009676 | METTL5
Description
NA
Coordinates
chr7:20038363-20039306:+
Coord C1 exon
chr7:20038363-20038412
Coord A exon
chr7:20038413-20038831
Coord C2 exon
chr7:20038832-20039306
Length
419 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
AAGGTCTCTTCTCATTATAGGTT
3' ss Score
8.41
Exon sequences
Seq C1 exon
AACTTAGGTATGACCTACCAGCATCATACAAGTTCCATAAGAAGAAATCA
Seq A exon
GTAAGTATAAAACCTAACAGTACTGAGAAGAAAGTGTCTTGTATTAGGGCAACTGTATTCCACTGAAAGAACCTAAGTTTTAGGGTCATGTCTACTGGATAATTCATAACATTTGAGAAAAGTTTCTTAGGACAGAAGTAAGTTCCATTGCTGTTAATACTCAGGGGTTGAACAGAGGGATCAGTAATGAGCAGTTTTCAGTTCTGAATTTATTGGTAGTTACTATGTAATATCACTTCGAGGTTATGAAGTCAGGAACCTTTTACATTTGAATGAGATGCCAGAGAATTTGAGAGCATGGACAATATAAACAAAACTATACATACAAAAGAGTTTTCCAGAGTGGCATCTTAAGAATAAGCATGCTGCTTTAACAAGAAGCTGTAACCCAATGAAATAAAGGTCTCTTCTCATTATAG
Seq C2 exon
GTTGACATTGAAGTGGATTTCATTAGATTTTCTACCAGAAACTCCTGAACTGAAGCATGTCTTTAAAACCTATTTTAAATGAACTAATAAAAACAATGGTATTTTTACTTTAGTATTACTGAGCTCCATCTCCGTTTTCTGTTTTCAGTTGTTTTGGTGCAGATTCTTCTTTTTCTGTTTCTTCTAGCGGTCTCTTCTTAGGACTTACTGGTTCTGCAAAATTGAATATATAGTCATTTATGGTAAAGGAAAGCCTTTCCATTACCCCAGACCTTCTGAAAAAATAAGAAACTTAAATTTCTCTTAAATGTTCATACTATGCTTGCCCAAGCATGGGTCCTGGACTGATCCACAGCCCTGTGGCTACGATAGATGTTTTGCTCATTACATGACCTTGAATTTCTACACATTCTGAAATACTGAAAGCAGGCCTTGTTGTCCTGATTTCAGCTAGGACAGAGTTGATTTTGTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009676:ENSGALT00000015749:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF051759=MTS=PD(2.0=17.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCATACAAGTTCCATAAGAAGA
R:
GGGCAAGCATAGTATGAACATTT
Band lengths:
358-777
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]