MmuEX0013637 @ mm9
Exon Skipping
Gene
ENSMUSG00000026870 | D730039F16Rik
Description
RIKEN cDNA D730039F16 gene [Source:MGI Symbol;Acc:MGI:1925246]
Coordinates
chr2:34743272-34747579:+
Coord C1 exon
chr2:34743272-34743317
Coord A exon
chr2:34743642-34743691
Coord C2 exon
chr2:34745800-34747579
Length
50 bp
Sequences
Splice sites
3' ss Seq
TAATTTTCTTCTCGTCACAGCTA
3' ss Score
7.25
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTACTTTTGGAAAGGAGAAATAGAAGAAGGCATTGAGGTCTCACTG
Seq A exon
CTAATAAAGACAAAGACTTCCAAGGTCTCCCGGCTGTTTGCCTATATGAG
Seq C2 exon
GTTGGCGCATCCTTTTGAAATCCCAGAGGTCTTCAGTATTCCCATGGACCAAGGAGATGCTCGCTTTTTACGATGGCTTGAGGAGGGAATGAAGGAGAACTAAGGAGAGAGAACCTTATTGTGCAGGCTTCTGCCTCTAGCCTTTGTTGACTGTGTTCTGGGAAAAAGCAGGCCTCCTTCTGCCTCCCATTGAATGTTCCTAACAGCAGACAGGTTCTAGCTGACCTGTGCATGCTGAATGAAGGGCTGAGAATGTCAAGGCTGGAAGTGAAAGCCAATCAGGCCTCCAAGAACCAAGTGGAACCGGTTTCGTGTGTTTGCAGGTGGCCTGAGGGTACGTGGGTAAGGATGAGAGACTGAGGGGAGGCAGCAGTGACGGTGAGGTTTCTCGTCTTCAGGCTCTGGGCTGACCATAAAGTACCTAGGGTATGATTGTTCCTCTGTTTCTTGTGGGGATAGGTGACCTTGATCATCTAGGGGTGTGTGGGAGAGCTACTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026870_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(26.3=100)
A:
PF0309110=CutA1=FE(15.7=100)
C2:
PF0309110=CutA1=PD(30.4=88.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGCATTGAGGTCTCACTG
R:
CCTGCACAATAAGGTTCTCTCTCC
Band lengths:
148-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types