DreEX0003468 @ danRer10
Exon Skipping
Gene
ENSDARG00000054288 | CUTA
Description
cutA divalent cation tolerance homolog (E. coli) [Source:HGNC Symbol;Acc:HGNC:21101]
Coordinates
chr5:33340062-33348134:-
Coord C1 exon
chr5:33348089-33348134
Coord A exon
chr5:33347890-33347939
Coord C2 exon
chr5:33340062-33341056
Length
50 bp
Sequences
Splice sites
3' ss Seq
AATAGGGTTTCTATTTTCAGCTT
3' ss Score
6.02
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
GTACTACTGGAAAGGTGAGATTAGGGATGCCACAGAAATACTACTG
Seq A exon
CTTGTGAGGACAAAAACATCTCTTGTGCAGAGACTTATGACTTATATCAC
Seq C2 exon
AGCCATCCACCCATATGACATCCCAGAAATCATCACTTTTCCCATTAATGATGGAAGCCAGCACTACTTGAAGTGGATAGCAGAAGCAGTAACTGACAGTTGACTTCTCAATGTCCCACAATGTCTTCTGTGGGAACTCAGTTTGCAGAAACATAAAGGGATTAATGGAGCACATGCAAGCACAAATTCTCAGGTTAATGAAAACCCTGGACCTTACAGAAAAAAACGATAAATGAATGTTATTAATATGAAGATCACGGTATACATTTACTGGATGAGTTTTTATGGAAAGAGATTTTTCTGATGTGGTTACACTAGTCCATTTATGCATTTAGCGGATGCTTTTCATTCAAATAGAGGAACAATAGCAACTTGCAATTATTGCAACATTATCCACAGTTTACAAAACCATGTTTGTCAGACAAACTTAAGCAGGGAAATGCACAGCAAAAAGTGATTTAATAAAGAAAAAAAGAAAAAGAAAAAAACATTTTGACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054288_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(14.7=100)
A:
PF0309110=CutA1=FE(15.7=100)
C2:
PF0309110=CutA1=PD(30.4=88.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGAGATTAGGGATGCCACA
R:
ACTGTCAGTTACTGCTTCTGCT
Band lengths:
134-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]