MmuEX0013637 @ mm10
Exon Skipping
Gene
ENSMUSG00000026870 | Cutal
Description
cutA divalent cation tolerance homolog-like [Source:MGI Symbol;Acc:MGI:1925246]
Coordinates
chr2:34887752-34892059:+
Coord C1 exon
chr2:34887752-34887797
Coord A exon
chr2:34888122-34888171
Coord C2 exon
chr2:34890280-34892059
Length
50 bp
Sequences
Splice sites
3' ss Seq
TAATTTTCTTCTCGTCACAGCTA
3' ss Score
7.25
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTACTTTTGGAAAGGAGAAATAGAAGAAGGCATTGAGGTCTCACTG
Seq A exon
CTAATAAAGACAAAGACTTCCAAGGTCTCCCGGCTGTTTGCCTATATGAG
Seq C2 exon
GTTGGCGCATCCTTTTGAAATCCCAGAGGTCTTCAGTATTCCCATGGACCAAGGAGATGCTCGCTTTTTACGATGGCTTGAGGAGGGAATGAAGGAGAACTAAGGAGAGAGAACCTTATTGTGCAGGCTTCTGCCTCTAGCCTTTGTTGACTGTGTTCTGGGAAAAAGCAGGCCTCCTTCTGCCTCCCATTGAATGTTCCTAACAGCAGACAGGTTCTAGCTGACCTGTGCATGCTGAATGAAGGGCTGAGAATGTCAAGGCTGGAAGTGAAAGCCAATCAGGCCTCCAAGAACCAAGTGGAACCGGTTTCGTGTGTTTGCAGGTGGCCTGAGGGTACGTGGGTAAGGATGAGAGACTGAGGGGAGGCAGCAGTGACGGTGAGGTTTCTCGTCTTCAGGCTCTGGGCTGACCATAAAGTACCTAGGGTATGATTGTTCCTCTGTTTCTTGTGGGGATAGGTGACCTTGATCATCTAGGGGTGTGTGGGAGAGCTACTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026870_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(26.3=100)
A:
PF0309110=CutA1=FE(15.7=100)
C2:
PF0309110=CutA1=PD(30.4=88.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGCATTGAGGTCTCACTG
R:
CCTGCACAATAAGGTTCTCTCTCC
Band lengths:
148-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types