RnoEX6016538 @ rn6
Exon Skipping
Gene
ENSRNOG00000018832 | RGD1564854
Description
similar to divalent cation tolerant protein CUTA [Source:RGD Symbol;Acc:1564854]
Coordinates
chr3:13951119-13954030:+
Coord C1 exon
chr3:13951119-13951164
Coord A exon
chr3:13951508-13951557
Coord C2 exon
chr3:13953772-13954030
Length
50 bp
Sequences
Splice sites
3' ss Seq
TAATTTTCTTCTCGTCACAGCTA
3' ss Score
7.25
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTACTTTTGGAAAGGAGAAATAGAAGAAGGCACTGAGGTCTCACTG
Seq A exon
CTAATAAAGACAAAGACTTCCAAAGTCCCCTGGCTCTTCGCCTATATGAG
Seq C2 exon
GTTGACGCATCCTTTTGAAGTCCCAGAGATCTTCAGTATCCCCATGGACCAAGGAGATACTCGCTATTTAAAATGGCTTGAGGAAGGCATGAAGGCGAACTAAGGAGAGAGAGAAGCTTATTGTGCAGGCTGCTTTTGTTCACTGTGCTCTGGGAAAAAGCCGGCCTCCTTCTGCCTCCCATAGGGCGTTCCTAACAGCACCCAGGTTCTAGCTGACCTGTGCATGCTGAATGAAGGACGGAGAATTTCAAGGCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018832-'7-4,'7-3,8-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(14.7=100)
A:
PF0309110=CutA1=FE(15.7=100)
C2:
PF0309110=CutA1=PD(30.4=88.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAGGCACTGAGGTCTCA
R:
CTCCTTAGTTCGCCTTCATGCC
Band lengths:
132-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]