BtaEX6036244 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N6Y4]
Coordinates
chr8:112133768-112138177:+
Coord C1 exon
chr8:112133768-112133813
Coord A exon
chr8:112134053-112134102
Coord C2 exon
chr8:112137370-112138177
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTCTTTTACAGTTA
3' ss Score
12.29
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
Exon sequences
Seq C1 exon
ATACTATTGGAATGGAGAAATAGAAGAAGCCACTGAGGTCCTGTTG
Seq A exon
TTAATAAAGACAAAGACTTCCAAGATCCATATGCTTTCCAGCTACATCAG
Seq C2 exon
GTTGGTGCATCCTTTTGAAATCCCAGAGCTCTTCAGTCTTCCCATGGACCAAGGAGATGTGCACTATTTAAAGTGGCTGGAGGAGGGCATGGAGGAGGAGTGAGTGGGGGCTTTCATGCCTCCTGCTGGGTGCCCCTAAGAGCCATCATTATCTGTTCTCCAGCTGAAGGGCGGCTTCTGTCTCGCATCTCTGGATTCCATGCATTTCTCAGCACAGAGGAGCTAAGTAACTTGTGGAGGGTGAAGGTCCAAGACCCCTGAGGCTAGAAGAGGATGCTGTGCCAGTCAGGCCAAGCAAGGACCCGGTGGCACTTGTCTCTGAGTGCCTCATGCATAAAGGTGGCCAGGAGTGGCAAGGTCACAGTGAGGGTGCGGCTGGTCTTCCCTGTTCATTGAGCCTAAACTGAGTACCACGTATGTTATCACTCTCCTGCTTCTGGTGAGGAATCACCTGGCGGCCTGTCACCCAGGAGTGTGTGGGGTGAAGGTCACCTTCTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016957-'11-10,'11-6,13-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(14.7=100)
A:
PF0309110=CutA1=FE(15.7=100)
C2:
PF0309110=CutA1=PD(30.4=88.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCCACTGAGGTCCTGTT
R:
CATGAAAGCCCCCACTCACTC
Band lengths:
140-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]